Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18h10
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   2.3  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    27   2.3  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   4.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   5.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   5.4  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   7.2  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   7.2  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 505 KVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLV-DESAFGSNVINY 642
           KVY+  + +N  +FNK  +L  A    + Y++L+ DES   +  + Y
Sbjct: 244 KVYETTLKRNAKIFNKELLLNSANHSLEAYMDLINDESRRSTAELQY 290


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 161 LMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQ 18
           LM  K   +  VQ+++ +AIN S + DL+     +    T  N+R  Q
Sbjct: 495 LMNGKGNDEELVQKVLNYAINQSSNQDLRDRAFAYQRLLTPENVRKAQ 542


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +1

Query: 427 ECLTDDQCDKFTYFAE----LKQEQALFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTY 594
           + +  D C  F    E    L + + LF  K+  ++V   E V+N    L D  I    +
Sbjct: 246 QVILPDSCGYFCIMGEIAMTLTKLRELFPSKLTPYVVTFVELVWNIIEKLLDPYIREVVF 305

Query: 595 VNLVDESAFG 624
            + +D+SAFG
Sbjct: 306 SDGLDDSAFG 315


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 388  DADEPIIYFENITECLTDDQCDKFTYFAELK 480
            DAD  I+   NI   LT ++CD+F Y   +K
Sbjct: 1023 DADYAIL---NILNLLTSNECDEFDYSVLMK 1050


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = -1

Query: 621  ERRLVDQIHICLIHNHCIEQYVVFVKNALVFKHQV----FVYFFHK*GLLLFEFSKISKL 454
            E +++DQ +   +++H ++     + +A VF+ Q     +       G  +F +S  ++ 
Sbjct: 1205 EVKIIDQTYTINVYHHYLDNIKYVLLDAPVFRRQTSKEPYPARMDDLGSAIF-YSAWNQC 1263

Query: 453  VALVVRKTFCNIFEINN 403
            +A V+R+   +I+ IN+
Sbjct: 1264 IAEVIRRNPIDIYHIND 1280


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 180 VSCLRRQQFGKVRRFRSSQKVYETKRIQQIAVFVTRKKRRQRYHGD*Q 323
           +SC ++Q +   + FR    +      Q++    +R KR+  Y+ D Q
Sbjct: 288 ISCFKKQPYNNPKFFRRKVDLINKFIGQRLMETYSRNKRKHYYNNDWQ 335


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -2

Query: 275 DSYLLYSFRLIDLLRASKSAHLTKLLSS--QATYLYHFACLMKYKDIQK 135
           +S+  +SF  +  L    S H+ K LSS   A  + H  CL  +  + K
Sbjct: 28  NSFFPHSFMFVKSLHLMTSQHIFKCLSSCNYALSILHNICLASFLYLSK 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,064
Number of Sequences: 5004
Number of extensions: 55367
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)