Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18h05
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 102 3e-22
04_01_0042 + 473912-474058,474208-474349,474442-476264 90 1e-18
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 89 2e-18
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 89 2e-18
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 89 2e-18
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 87 8e-18
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 85 4e-17
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 83 2e-16
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428... 29 2.2
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 28 5.0
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 27 8.7
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 102 bits (244), Expect = 3e-22
Identities = 58/115 (50%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Frame = +2
Query: 257 LGSSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLY 436
+G G TD+E V RE E+IS K LR A+ + FQ EV+R+M +IINSLY
Sbjct: 74 IGGVPHGLSTDSEVVQREAESIS--------RKTLRSSAEKFEFQAEVSRLMDIIINSLY 125
Query: 437 RNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA--NPELSIRIKAEPDKRLLHI 595
NK+IFLRELISN SDALDKIR ++LTD+ VL +L I+IK + +K++L I
Sbjct: 126 SNKDIFLRELISNASDALDKIRFLALTDKEVLGEGDTAKLEIQIKLDKEKKILSI 180
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 89.8 bits (213), Expect = 1e-18
Identities = 43/75 (57%), Positives = 54/75 (72%)
Frame = +2
Query: 374 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELS 553
+ + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A PEL
Sbjct: 13 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELF 72
Query: 554 IRIKAEPDKRLLHII 598
IR+ + L II
Sbjct: 73 IRLVPYKPSKTLSII 87
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 89.4 bits (212), Expect = 2e-18
Identities = 43/80 (53%), Positives = 54/80 (67%)
Frame = +2
Query: 359 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 538
+ + + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A
Sbjct: 1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 60
Query: 539 NPELSIRIKAEPDKRLLHII 598
PEL I I + L II
Sbjct: 61 QPELFIHIVPDKASNTLSII 80
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 89.4 bits (212), Expect = 2e-18
Identities = 43/80 (53%), Positives = 54/80 (67%)
Frame = +2
Query: 359 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 538
+ + + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A
Sbjct: 1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 60
Query: 539 NPELSIRIKAEPDKRLLHII 598
PEL I I + L II
Sbjct: 61 QPELFIHIVPDKASNTLSII 80
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 89.4 bits (212), Expect = 2e-18
Identities = 43/80 (53%), Positives = 54/80 (67%)
Frame = +2
Query: 359 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 538
+ + + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A
Sbjct: 1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 60
Query: 539 NPELSIRIKAEPDKRLLHII 598
PEL I I + L II
Sbjct: 61 QPELFIHIVPDKASNTLSII 80
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 87.4 bits (207), Expect = 8e-18
Identities = 40/80 (50%), Positives = 57/80 (71%)
Frame = +2
Query: 338 SVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLT 517
+VA+ E + + +Q EV+R+M LI++SLY +KE+FLREL+SN SDALDK+R + +T
Sbjct: 330 AVAEKAEETAEEEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLGVT 389
Query: 518 DRGVLEANPELSIRIKAEPD 577
D +L EL IRIK +PD
Sbjct: 390 DSSLLADGGELEIRIKPDPD 409
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 85.0 bits (201), Expect = 4e-17
Identities = 37/68 (54%), Positives = 53/68 (77%)
Frame = +2
Query: 374 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELS 553
+ + +Q EV+R++ LI++SLY +KE+FLREL+SN SDALDK+R +S+TD VL EL
Sbjct: 83 EQFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDSSVLSDGGELE 142
Query: 554 IRIKAEPD 577
IRIK +P+
Sbjct: 143 IRIKPDPE 150
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 82.6 bits (195), Expect = 2e-16
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Frame = +2
Query: 275 GSRTDAEAVLREEEAISPDALSVAQMKELRDR--AQNYTFQTEVNRMMKLIINSLYRNKE 448
G+ A LRE + S A + D + + +Q EVNR+M LI++SLY NKE
Sbjct: 318 GTDNAASLKLREGSLVGRRYESSAAAVDSSDTPPVEKHEYQAEVNRLMDLIVHSLYSNKE 377
Query: 449 IFLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEPDKRLLHI 595
+FLREL+SN SDALDK+R +S+TD +++ L IRI+ + + ++ I
Sbjct: 378 VFLRELVSNASDALDKLRYLSVTDPDLIKDGAGLDIRIQTDKENGIITI 426
>01_06_1797 +
39941482-39941608,39942302-39942497,39942601-39942828,
39943157-39943388,39943476-39943583,39943696-39943968,
39944261-39944545
Length = 482
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 338 SVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYR--NKEIFLRELISNGSDALDKIRLMS 511
SV Q+K R R Q ++ + NSL+ +++ + ++L+ GS L ++
Sbjct: 383 SVPQVKGHRLRGGPQMIQLSLDGKRIYVTNSLFSRWDEQFYGQDLVKKGSHML---QIDV 439
Query: 512 LTDRGVLEANPELSIRIKAEPD 577
T++G L NP + AEP+
Sbjct: 440 DTEKGGLSINPNFFVDFGAEPE 461
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 116 TSKSRWMFLTPAMKHIWLFGLGVLLLSGW 202
TS S W+FL P +WL L +G+
Sbjct: 572 TSTSMWIFLQPLTTSLWLASLAFFCFTGF 600
>09_06_0274 +
21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 286 SAGSFSG*TQVGIDCDLFHCA 224
+AG+ +G +VGI C LFH A
Sbjct: 84 AAGTAAGGVEVGISCGLFHSA 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,943,372
Number of Sequences: 37544
Number of extensions: 225937
Number of successful extensions: 695
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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