Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18h05
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 136 9e-33
Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical pr... 81 4e-16
U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical p... 59 2e-09
U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical p... 59 2e-09
AF143150-1|AAD37916.1| 222|Caenorhabditis elegans heat shock pr... 59 2e-09
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 33 0.21
U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical pr... 29 3.3
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 28 4.4
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 28 4.4
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 28 4.4
Z46240-2|CAA86311.1| 213|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 136 bits (330), Expect = 9e-33
Identities = 68/108 (62%), Positives = 84/108 (77%)
Frame = +2
Query: 272 EGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEI 451
E + + + REE++I D LSV+Q+KELR +A+ + FQ EVNRMMKLIINSLYRNKEI
Sbjct: 28 EDAPKETKEETREEDSIKLDGLSVSQIKELRSKAEKHEFQAEVNRMMKLIINSLYRNKEI 87
Query: 452 FLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEPDKRLLHI 595
FLRELISN SDALDKIRL+SLTD L E+S++IKA+ + RLLHI
Sbjct: 88 FLRELISNASDALDKIRLLSLTDPEQLRETEEMSVKIKADRENRLLHI 135
>Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical
protein C47E8.5 protein.
Length = 702
Score = 81.4 bits (192), Expect = 4e-16
Identities = 38/80 (47%), Positives = 55/80 (68%)
Frame = +2
Query: 359 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 538
+ + A+ + FQ E+ ++M LIIN+ Y NKEI+LRELISN SDALDKIR +LT+ L+
Sbjct: 1 MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDT 60
Query: 539 NPELSIRIKAEPDKRLLHII 598
EL I+I +++ L I+
Sbjct: 61 GKELFIKITPNKEEKTLTIM 80
>U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical
protein R151.7a protein.
Length = 672
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +2
Query: 347 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 526
Q + + Q + FQ E +M ++ SLY + E+F+RELISN SDAL+K R L +G
Sbjct: 34 QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91
Query: 527 VLEANPELSIRIKAEPDKRLL 589
+ P IRI DKR +
Sbjct: 92 DVAEGPS-EIRITTNKDKRTI 111
>U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical
protein R151.7b protein.
Length = 479
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +2
Query: 347 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 526
Q + + Q + FQ E +M ++ SLY + E+F+RELISN SDAL+K R L +G
Sbjct: 34 QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91
Query: 527 VLEANPELSIRIKAEPDKRLL 589
+ P IRI DKR +
Sbjct: 92 DVAEGPS-EIRITTNKDKRTI 111
>AF143150-1|AAD37916.1| 222|Caenorhabditis elegans heat shock
protein 75 protein.
Length = 222
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +2
Query: 347 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 526
Q + + Q + FQ E +M ++ SLY + E+F+RELISN SDAL+K R L +G
Sbjct: 34 QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91
Query: 527 VLEANPELSIRIKAEPDKRLL 589
+ P IRI DKR +
Sbjct: 92 DVAEGPS-EIRITTNKDKRTI 111
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 32.7 bits (71), Expect = 0.21
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Frame = +2
Query: 260 GSSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYR 439
G G D ++V EEE I D L + + +RD + E+ R K + S +
Sbjct: 122 GRRGRGDAADDDSVPMEEEDIPVDILENIRGRTIRDHVSDEAVAKEIERRFKNFLRSFHE 181
Query: 440 --NKEI-FLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEPDKRL 586
NK+ +++ + S +D + + +S TD +S + P++ L
Sbjct: 182 PGNKQTKYIQMIKSMAADNRESLE-VSFTDLSDDNGEQNISYFLPEAPNEML 232
>U29381-3|AAA68758.2| 617|Caenorhabditis elegans Hypothetical
protein F35D11.3 protein.
Length = 617
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 311 EEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKL 418
E SPD V Q + LR + YT + E N +M+L
Sbjct: 316 ESDTSPDQAFVHQWRHLRHTKEQYTLRYESNYLMEL 351
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -3
Query: 559 ADAELRVRFQHAAVRQRHQTDLVQRI*TVRDQLAEEDLFISVERVDDELHHAVDFRLERV 380
ADA+ V A +Q TD +R+ T + E+L + +DDE +DF+ +
Sbjct: 161 ADAQSEVEMLRARFKQL--TDEEKRV-TADNSRIWEELQKARSDLDDETIGRIDFQNQVQ 217
Query: 379 VLRAVAQLLHLRHAQRVRGDGLLLAQ 302
L + L H Q V+ LLAQ
Sbjct: 218 TLMEELEFLRRVHEQEVKELQALLAQ 243
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -3
Query: 559 ADAELRVRFQHAAVRQRHQTDLVQRI*TVRDQLAEEDLFISVERVDDELHHAVDFRLERV 380
ADA+ V A +Q TD +R+ T + E+L + +DDE +DF+ +
Sbjct: 161 ADAQSEVEMLRARFKQL--TDEEKRV-TADNSRIWEELQKARSDLDDETIGRIDFQNQVQ 217
Query: 379 VLRAVAQLLHLRHAQRVRGDGLLLAQ 302
L + L H Q V+ LLAQ
Sbjct: 218 TLMEELEFLRRVHEQEVKELQALLAQ 243
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = -3
Query: 559 ADAELRVRFQHAAVRQRHQTDLVQRI*TVRDQLAEEDLFISVERVDDELHHAVDFRLERV 380
ADA+ V A +Q TD +R+ T + E+L + +DDE +DF+ +
Sbjct: 192 ADAQSEVEMLRARFKQL--TDEEKRV-TADNSRIWEELQKARSDLDDETIGRIDFQNQVQ 248
Query: 379 VLRAVAQLLHLRHAQRVRGDGLLLAQ 302
L + L H Q V+ LLAQ
Sbjct: 249 TLMEELEFLRRVHEQEVKELQALLAQ 274
>Z46240-2|CAA86311.1| 213|Caenorhabditis elegans Hypothetical
protein B0272.2 protein.
Length = 213
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 413 KLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGV 529
+L++N ++ L +LIS GS L+ ++ L RGV
Sbjct: 123 ELLLNDRLQSSHTHLDDLISQGSAVLENLKSQHLNLRGV 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,800,407
Number of Sequences: 27780
Number of extensions: 187492
Number of successful extensions: 539
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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