Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18g18
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   138   3e-33
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711...    32   0.27 
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394...    29   2.5  
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444...    29   2.5  
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536...    27   7.6  
01_07_0069 + 40869496-40869535,40869627-40869663,40870241-408703...    27   7.6  

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  138 bits (334), Expect = 3e-33
 Identities = 81/171 (47%), Positives = 103/171 (60%), Gaps = 8/171 (4%)
 Frame = +1

Query: 67  SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 237
           SL  ++ +NL+    +E +R+  G      LE I L E++               F A  
Sbjct: 28  SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87

Query: 238 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 402
           E  R PR+++VG+IQ+SIA+PT     +QKKAI  KVK +ID AG  GVNI+C Q     
Sbjct: 88  EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147

Query: 403 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILER 555
           E W MPFAFCTREK+ WCEFAE   DG +T FL++LA KY MVIVS ILER
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILER 196


>02_04_0096 +
           19669428-19669525,19670770-19670818,19671041-19671132,
           19671235-19671386,19671478-19671524,19671617-19671650,
           19671769-19671935,19672070-19672166,19672239-19672408
          Length = 301

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = +1

Query: 349 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 528
           +++I  A ++G NI+  QEL+   + FC  ++  + + A+  +  PT    ++LA +  +
Sbjct: 32  ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90

Query: 529 VIVSSILE 552
           VI  S  E
Sbjct: 91  VIPVSFFE 98


>04_04_0835 +
           28538032-28539006,28539113-28539203,28539291-28539448,
           28539543-28539594,28539707-28539786,28539890-28539983,
           28540078-28540633,28541160-28541259,28541576-28541617,
           28542445-28542588
          Length = 763

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 482 PSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSW 372
           PS+  S N     F L++N      NSW Q+++T  W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664


>03_02_0801 +
           11343227-11343885,11344018-11344087,11344362-11344433,
           11344511-11344980,11345626-11346598
          Length = 747

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 455 HHGCFSLVQNAKGIFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 324
           H  C ++++ + G+  N W+ +   PS+P    SMI    L +  F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694


>06_01_0729 +
           5367796-5368071,5368390-5368483,5368708-5368782,
           5368919-5368997,5369155-5369170,5369260-5369346,
           5369451-5369533,5369616-5369769
          Length = 287

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 391 ICFQELWNMPFAFCTREKQPWCEFAESAEDG--PTTTFLRELAIKYAMVIV-SSILER 555
           + FQE+WN P++    E  P     E  + G  P+ + L E+A +  + IV  SI ER
Sbjct: 16  VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIPER 68


>01_07_0069 +
           40869496-40869535,40869627-40869663,40870241-40870387,
           40872360-40872405,40872580-40872846,40873151-40873540
          Length = 308

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 223 FPAKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIF 339
           F  K+    PPRI  V    HS A P D    E+K+  +
Sbjct: 87  FDTKEMAIAPPRIQPVSAHLHSSASPKDSDHQEKKQVCY 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,932
Number of Sequences: 37544
Number of extensions: 294296
Number of successful extensions: 926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)