Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18g11
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2...   102   2e-23
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   0.64 
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    26   2.6  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   3.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   4.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   4.5  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   4.5  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   5.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   5.9  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.9  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    25   5.9  
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.9  

>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score =  102 bits (245), Expect = 2e-23
 Identities = 41/80 (51%), Positives = 59/80 (73%)
 Frame = +2

Query: 134 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 313
           M +R    ++LE LQ++Y+G G+A TTKYEW++NQHRD+  S +GHP LL+Y A    E 
Sbjct: 1   MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEP 60

Query: 314 KARVKFNLMERMLQPCGPPP 373
           + +V+ NL+E+M+ PCGPPP
Sbjct: 61  RVQVRKNLLEKMIMPCGPPP 80


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 307 IFYDRKVTQQIRMTHVTAARVAMLVHKPFI 218
           +F   K+T  + MTH+ +A+   L +KP I
Sbjct: 364 LFSSFKITTDLEMTHLESAKKKYLAYKPLI 393


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 316 FRFIFYDRKVTQQIRMTHVTAARVAMLVHKPFIFCSVG 203
           ++++    K  + +R    +A R AML HKP +  S G
Sbjct: 155 YKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSSG 192


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 193 HRPRRHYKI*MAYEPTSRLVLQLHGSS 273
           +RPR+ Y   +   PT  LV Q+H  S
Sbjct: 249 YRPRKAYPTTLILAPTRELVCQIHEES 275


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 6/105 (5%)
 Frame = +2

Query: 92   SINDFNKHLAFKNKMGERYNIHSQLEHLQSKYIGTGHADTTKY------EWLMNQHRDSC 253
            +I D    +   N + E       +E  ++ Y  TG +DT          WL        
Sbjct: 697  AIKDATTLINIGNCLAELKQFSRAIEVFETVYSSTGESDTYGVLSCLGRVWLQRGRESKN 756

Query: 254  CSYMGHPDLLSYFAIVENESKARVKFNLMERMLQPCGPPPEKPED 388
              Y+      +  A+ +N     + FN+     Q C    +KPE+
Sbjct: 757  VDYLKESVRYATLALEKNPENPSLLFNVAFVQFQLCELIRQKPEN 801


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 463  YVMIRDSKSNNK*ISLILFLQSKRLIFRLFWRWAAWLKHSFHQIE 329
            Y  I D    N  +SL      K  +FR  WR A+W K S   ++
Sbjct: 985  YAEIDDRNPEN--VSLYHIALHKINVFRDLWRLASWHKESARTVK 1027


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 355 LKHSFHQIEFYARFRFIFYDRKVTQQIR 272
           LK+  H I+ + +  F FY+    QQIR
Sbjct: 397 LKNKVHTIKEFEKIVFYFYEASDLQQIR 424


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 262 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 134
           +T   +A  ++ P  F   G  CA +FA  +  +   +   TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 370 RWAAWLKHSFHQIEFYARFRFIFYD 296
           +W  W+ H+FH I+     RF+  D
Sbjct: 429 QWKTWISHTFH-IDPMGPSRFVLMD 452


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 262 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 134
           +T   +A  ++ P  F   G  CA +FA  +  +   +   TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 269 HPDLLSYFAIVENESKARVKFNLMERMLQ 355
           HP+++S   +++ E+K  + F  ME+ L+
Sbjct: 58  HPNIMSLSDVLQTENKLMLVFEYMEKDLK 86


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 200 HADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKARVKFN-LMERMLQPCGP 367
           H D    E     H      Y    D+LS + + EN+    VK N ++  +L+ C P
Sbjct: 32  HIDKYTDESFFRLHDLGKKGYWSDQDILSLYGLFENDEVPFVKKNEVLVDVLKKCDP 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,377
Number of Sequences: 5004
Number of extensions: 34974
Number of successful extensions: 88
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)