Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18g08
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    28   1.2  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    26   4.8  
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    26   4.8  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   6.4  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.5  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 536 EHEAGYLIPW*NFKVVYFIKFSSDNTSALSSWRQR 432
           +H +GYL  W N+K  Y +++ + N   LS ++ +
Sbjct: 255 QHMSGYLKKWTNYKSGYKLRWFTLNNGVLSYYKNQ 289


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 254 EKSCMICTLKKFIIMMKHFINMSGTIFQTI*K 159
           EKS  ICTLK F   ++H I  +  +F+ + K
Sbjct: 587 EKSFPICTLKNFPNRIEHTIAWARDLFEGLFK 618


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 336 DVFIPKTVTLKNKTVFSEWATTGVYKSRKKLYDLYSEKVYNN 211
           ++ I +T T     +F+E  TT      +K Y+LYS+ V  N
Sbjct: 66  NMHILQTHTGMKFVLFTEKKTTNARLQLQKFYELYSDYVLKN 107


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 273 TGVYKSRKKLYDLYSEKVYNN-DETFHQYVRNYIPNYL 163
           TG  +  +  +++   + Y    ETF  YV+ Y PN L
Sbjct: 246 TGQSQDLECFFEITQSRAYQEVQETFEYYVQTYDPNNL 283


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = +3

Query: 444 ATERAS---VVRRKFYKIHNFKILP 509
           ATE++S   ++  K Y++H F+++P
Sbjct: 64  ATEKSSAAQILGHKIYRVHKFEVIP 88


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +2

Query: 233 YRSYNFFLLLYTPVVAHSLNTVLFFNVTVLGINTSVKTKLILSNIFWYIPP 385
           YR++ FFLLL T  V  + +T++    T++ I   V  + +L+   +++PP
Sbjct: 580 YRTHLFFLLLDTKPVYKASSTLIVHLRTLVIIYNRVCIESLLA---FFVPP 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,895
Number of Sequences: 5004
Number of extensions: 53989
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)