Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18g08
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   2.8  
11_06_0507 + 24402239-24402297,24402686-24402753,24403704-244037...    28   5.0  
11_05_0074 + 18850567-18851095,18851249-18851274,18851353-188516...    28   6.6  
05_07_0180 - 28223175-28223536,28223628-28223811                       28   6.6  
04_03_0904 + 20717005-20718087                                         28   6.6  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 390  PVPYCDHATIPSRTPLPPATERAS 461
            P P CDHA   +R PLPP     S
Sbjct: 989  PPPLCDHAKKYTRIPLPPPPPEGS 1012


>11_06_0507 +
           24402239-24402297,24402686-24402753,24403704-24403785,
           24403894-24403945,24405368-24405413,24405568-24405626,
           24405736-24405803,24406009-24406119,24406236-24406312,
           24406478-24406554
          Length = 232

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 288 SEWATTGVYKSRKKLYDLYSEKVYNNDETFHQYVRNYIP 172
           SE  +T  Y  RKK     S K  NNDE F +++    P
Sbjct: 194 SEDESTEKYSRRKKDRKRSSRKSSNNDEGFEEFLEGMFP 232


>11_05_0074 +
           18850567-18851095,18851249-18851274,18851353-18851645,
           18851898-18852699,18852874-18853022,18853105-18853393,
           18853479-18853517,18853623-18853661
          Length = 721

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 148 AAKSLHLSYLIKNAPDKIKMTWNIIGRESGK 56
           A K LHL Y+ K+   K     NI+G+  GK
Sbjct: 510 ACKDLHLYYMEKSNARKPSKATNILGQHDGK 540


>05_07_0180 - 28223175-28223536,28223628-28223811
          Length = 181

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 303 NKTVFSEWATTGVYKSRKKLYDLYSEKVYN 214
           NKT +++WA T       KL  LY   VYN
Sbjct: 42  NKTYYADWARTRNISVGDKLMFLYRSGVYN 71


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 342 RPN*FSQTYSGISRRCPVPYCDHATIPSRTPLPP 443
           +P     TY+   +  P PY    T P+ TP PP
Sbjct: 77  KPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPP 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,233,528
Number of Sequences: 37544
Number of extensions: 330027
Number of successful extensions: 981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)