Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18g08
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF025461-6|AAK84545.1|  335|Caenorhabditis elegans Hypothetical ...    28   4.4  
U46668-5|AAA93349.2|  569|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 189 HIDEMFHHYYKLFQSTDHTTFFY 257
           H  E+F HY K+F   DHT   Y
Sbjct: 89  HFQEVFWHYKKIFIEIDHTVTDY 111


>AF025461-6|AAK84545.1|  335|Caenorhabditis elegans Hypothetical
           protein M01D1.10 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 597 LQHLQYNFAPSEHKVIILTRRTRG 526
           L+ +QY  AP E KV IL + TRG
Sbjct: 271 LEGIQYETAPIERKVRILNKYTRG 294


>U46668-5|AAA93349.2|  569|Caenorhabditis elegans Hypothetical
           protein F38E9.1 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 219 YNNDETFHQYVRNYIPNYLEKFV*RQNL 136
           Y +D++F +YVRN+  N++++ V R  L
Sbjct: 39  YAHDQSFLRYVRNFRCNFVKRIVERWGL 66


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 459  SVVRRKFYKIHNFKILPGYEI 521
            + +RR++Y  H+F+ LPG+ I
Sbjct: 1001 TAIRREYYPEHDFESLPGHSI 1021


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,340,967
Number of Sequences: 27780
Number of extensions: 303771
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)