Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18g08
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    26   0.32 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.0  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   9.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   9.2  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 299 LFFNVTVLGINTSVKTKLILSNIFW 373
           + F   ++G++ ++ T L LSN+FW
Sbjct: 15  VLFPEKIIGLHNNMCTSLNLSNLFW 39


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 252 KKLYDLYSEKVYNNDETFHQYVRNYIPNYLEKF 154
           + L +  + K +NND+    Y+  +  N  +KF
Sbjct: 285 RSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKF 317


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 305 KTKRCSASGPPPECTKVEKSCMI 237
           + K+C   G  PEC   E  C +
Sbjct: 243 RLKKCLTVGMRPECVVPEYQCAV 265


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 305 KTKRCSASGPPPECTKVEKSCMI 237
           + K+C   G  PEC   E  C +
Sbjct: 40  RLKKCLTVGMRPECMVPEYQCAV 62


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 205 NISSICQELYSKLFRKVCLAAKSLHLSYLIKNAPDKIKMTWN 80
           NIS++C+EL   + +KV  +     L  +I+   DK  +T++
Sbjct: 130 NISALCKELGISVVQKV--SHTLYKLDEIIERNGDKPPLTYH 169


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 417 IPSRTPLPPATERA 458
           IP+  P+PP  +RA
Sbjct: 103 IPTAPPIPPEIQRA 116


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 219 YNNDETFHQYVRNYIPNY 166
           YN +  ++ Y  NY  NY
Sbjct: 92  YNYNNNYNNYNNNYNTNY 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,755
Number of Sequences: 438
Number of extensions: 3953
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)