Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18g06
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 64 2e-11
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.23
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 30 0.30
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 29 0.53
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 29 0.70
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 29 0.70
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 0.93
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 28 0.93
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 28 1.2
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 1.6
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 2.8
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 3.7
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 26 3.7
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.9
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 6.5
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 25 6.5
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 6.5
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 8.6
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 63.7 bits (148), Expect = 2e-11
Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 5/155 (3%)
Frame = +3
Query: 138 LTKLHKMEGIDDIEHIASDHDQLISVISKLDKTQHIIEPTRNEPTNINSEFNLIKKSNKS 317
L + K + D ++SD + I IS + K ++ +P TN SE+NLI S K+
Sbjct: 235 LNQKRKKDEADAESVLSSDDNDSIEEIS-IKKVKY--DP---HETNKESEYNLIGSSEKT 288
Query: 318 ILKNVSNILSDTASH--VEITKKLLKSQEES---KVLSKPLEKPQVERIKRATGYLETKK 482
I +++++L + ++++ K L S+ S K L PL K +R++R Y +TK
Sbjct: 289 I--DITDLLDSIPMNEQLKVSLKPLVSESSSISSKKLDAPLAKSIQDRLERQAAYEQTKN 346
Query: 483 KVGRWDPIVARSRTVDQVFFPLKKSRK*IAANASL 587
+ +W PIVA +R DQ+ FP+ ++ + + +N L
Sbjct: 347 DLEKWKPIVADNRKSDQLIFPMNETARPVPSNNGL 381
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.3 bits (65), Expect = 0.23
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = +3
Query: 201 QLISVISKLDKTQHIIEPTRNEPTNINSEFNLIKKSNKSI---LKNVSNILSDTASHVEI 371
QL++V KLDK + E + + ++I + + SNKS+ + + +L + V
Sbjct: 209 QLLTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSLRGEQERLEKLLVSSNKTVST 268
Query: 372 TKKLLKS-QEESKVLSKPLEKPQVERIKRATGYLETKKKVGRW-DPIVARSRTVDQV 536
++ S + E K L + LEK + + + E K V + D IV + + ++ +
Sbjct: 269 LRQTENSLRAECKTLQEKLEKCAINE-EDSKLLEELKHNVANYSDAIVHKDKLIEDL 324
Score = 29.5 bits (63), Expect = 0.40
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Frame = +3
Query: 153 KMEGIDDI-EHIASDHDQLISVISKLDKT-------QHIIEPTRNEPTNINSEFNLIKKS 308
+ E I ++ E S + SV SKLD+T + IE +N+ + + E N + S
Sbjct: 953 RQEEISNLKEENMSQSQAITSVKSKLDETLSKSSKLEADIEHLKNKVSEVEVERNALLAS 1012
Query: 309 NKSILKNVSNILSDTAS-HVEITKKLLKSQEESKVLS 416
N+ ++ ++ N + AS EI KK ++ + LS
Sbjct: 1013 NERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLS 1049
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 29.9 bits (64), Expect = 0.30
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +3
Query: 228 DKTQHIIEPTRNEPTNINSEFNLIKKSNKSILKNVSNILSDTASHVEITKKLLKSQEESK 407
D H I P + N +S+ + S LKNV +S + +H E + L +EE
Sbjct: 169 DTNNHQIPPPK---PNFSSKAGSSSPISVSPLKNVKAYISQSPTHSEASSVLSSEEEEEN 225
Query: 408 VLSKPLEKPQVE 443
V++ P +
Sbjct: 226 VINSSKSVPSFD 237
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 29.1 bits (62), Expect = 0.53
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +3
Query: 264 EPTNINSEFNLIKKSNKSILKNVSNILSDTASHVEITKKLLKSQEESKV-----LSKPLE 428
E T +++ F I +++L +VSN+ + A + TKK +S +ES + KP+E
Sbjct: 36 EKTKLSTNFE-INLPRRTVLSDVSNVGKNNADEKD-TKKAKRSFDESNLSTNEEADKPVE 93
Query: 429 KPQVERIK 452
V+++K
Sbjct: 94 SKFVKKLK 101
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 0.70
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 219 SKLDKTQHIIEPTRNEPTNINSEFNLIKKSNKSILKNVSNILSDTASHVEITKKLLKSQE 398
S L+K E N +N K + ++ +++ S +++ S +E KKLL +E
Sbjct: 178 SYLEKQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEE 237
Query: 399 ES 404
ES
Sbjct: 238 ES 239
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 28.7 bits (61), Expect = 0.70
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 255 TRNEPTNINSEFNLIKKSNKSILKNVSNILSDTASHVEITKKL 383
+++ P N+ S F+ + + KNV N+L+D ++ E K L
Sbjct: 240 SQSRPDNL-SPFSHLSNESSDFFKNVKNVLTDVETYHEFLKLL 281
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 28.3 bits (60), Expect = 0.93
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 480 FLFLNILSLALYAQPVVFLMVYLRPWTLPGFSA 382
F+F+++LS AL + +L Y+ PW + F +
Sbjct: 113 FVFMSVLSSALQKKLAPWLKFYITPWVMGFFDS 145
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 28.3 bits (60), Expect = 0.93
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 306 SNKSILKNVSNILSDTASHV---EITKKLLKSQEESKVLSKPLEKPQVERIKRATGYLET 476
S K I K V I++ V ++ + + + K L KP+EKP+ E+I+ AT ++
Sbjct: 140 STKYIQKTVGLIIASVKRKVSFSDVEEDEFEPENTRKKLQKPIEKPKKEKIE-ATPKIDG 198
Query: 477 KKKV 488
K++
Sbjct: 199 GKRL 202
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +3
Query: 276 INSEFNLIKKSNKSILKNVSNILSDTASHVEITKKLLKSQEESKVLSKPLEKPQVERIKR 455
+ S NLI K + + N+ +DT H + + LK E+ +L++ L+ ++ +K+
Sbjct: 250 VRSLLNLIDKFIDKLSEQSGNVTADTNEHYDRAMQYLKQLVEN-ILNRSLDN-LIDTLKQ 307
Query: 456 ATGYLETKKKVGRW 497
E +++ W
Sbjct: 308 VQHDAENDEELKDW 321
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/83 (26%), Positives = 32/83 (38%)
Frame = +3
Query: 315 SILKNVSNILSDTASHVEITKKLLKSQEESKVLSKPLEKPQVERIKRATGYLETKKKVGR 494
S L +S S +TKK S +ESK + E + E ++ + +K R
Sbjct: 505 SRLSELSKTFSPEIREPSLTKKTAVSMQESKEEGRSDESSESEESGSSSDESDNSEKEDR 564
Query: 495 WDPIVARSRTVDQVFFPLKKSRK 563
+PI R KK RK
Sbjct: 565 SNPIPVEKRA--STVLNTKKKRK 585
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +3
Query: 228 DKTQHIIEPTRNEPTNINSEFNLIKKSNKSILKNVSNILSDTASHVEITKKLLKSQEESK 407
+K++ I+P++ E I + NK ++ + LS + + L + +++K
Sbjct: 250 NKSEQTIKPSKQNKQK--EEKKTISQGNKPNSRDEDSELSIDVPLSMLNRSLANNSQKNK 307
Query: 408 --VLSKPLEKPQVERIKRATGYLETKKKVGR 494
+KPL++ + +K K+K GR
Sbjct: 308 KRTPNKPLQESSINSVKEGESNPVVKRKRGR 338
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -3
Query: 498 PTDQLSFLFL-NILSLALYAQPVVFLMVY-LRPWTLPGFSAIFS*SLHVKQYHSK 340
PT Q +FL ++ ALY P + L V + WTLP F+ F + H K
Sbjct: 792 PTSQTYRVFLLEVIINALYYNPSMSLGVLEMHQWTLPFFALWFENIPSFTRVHDK 846
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 276 INSEFNLIKKSNKSILKNVSNILSDTASHVEITKKLLKSQEESKVLSKPLEK 431
I + N ++K+ L+N +N L DT + + + L Q+E K L +EK
Sbjct: 106 IEDQNNSLEKTEFIALQN-ANSLQDTQAKLRLDPLLAIKQQEQKQLQTLMEK 156
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 321 LKNVSNILSDTASHVEITKKLLKSQEES 404
L VS+ SDTASHV T+K ++E+
Sbjct: 6 LSVVSSTASDTASHVSDTRKRQYQRDEA 33
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 4.9
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 195 HDQLISVISKLDKTQHIIEPTRNEPTNINSEF-NLIKKSNKSILKNVSNILSDTASHVEI 371
H QL+S+IS+ + PT E + +E NL K + + +L+ T V
Sbjct: 1058 HTQLVSLISRARDPDYYSRPTIEEAKTVLAESENLTNKPEEYTV--AQKLLTQTYEWVRR 1115
Query: 372 TKKLL-KSQEESKVLSKPLE 428
K+L K+ ++ ++ LE
Sbjct: 1116 GKRLFGKANAPLEIFNQHLE 1135
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 6.5
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Frame = +3
Query: 246 IEPTRNEPTNINSEFNLI-KKSNKSILKNVSNILSDTASHVE--------ITKKLLKSQE 398
+E PTN+ +E ++ ++++ SI N + H I +K + +E
Sbjct: 561 VESKSVPPTNMATERGVVGRRASMSIAVNARRVSKPEKEHTNPNAEQGDVIPEKPMSIKE 620
Query: 399 ESKVL--SKPLEKPQVERIKRATGYLETKK 482
+L EKP+VE R T +TKK
Sbjct: 621 RMNMLMTKTDYEKPKVEGYGRYTDVQQTKK 650
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 147 LHKMEGIDDIEHIASDHDQLISVISKLDKTQHIIEPTRNEP-TNINSEF--NLIKKSNKS 317
L G+D I+H + + ++++ VIS + P + P T + F + ++ SN +
Sbjct: 212 LTDQRGLDTIKHKSIEQNEILHVISDTLSSPRRRNPLLSSPKTPLRRSFSKSKVRNSNST 271
Query: 318 ILKNVSNILS 347
+N +++S
Sbjct: 272 KRRNFISLIS 281
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/81 (20%), Positives = 38/81 (46%)
Frame = +3
Query: 195 HDQLISVISKLDKTQHIIEPTRNEPTNINSEFNLIKKSNKSILKNVSNILSDTASHVEIT 374
H + I +S ++ ++P+N ++ + KS+ +S+ + +H +
Sbjct: 269 HSESIKGLSSSEQGTVYSLKASHDPSN-QTQLSSPNKSSSPTSIEISDFSKNNENHDQSE 327
Query: 375 KKLLKSQEESKVLSKPLEKPQ 437
K +EE +L++P+E PQ
Sbjct: 328 NK---EEEEDMMLTRPIEIPQ 345
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.0 bits (52), Expect = 8.6
Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Frame = +3
Query: 144 KLHKMEGIDDIEHIASDHDQ---LISVISKLDKTQHIIEPTRNEPTNINSEFNLIKKSNK 314
KL + ++ + SD Q L ++ + + ++E + + N+E + + K
Sbjct: 967 KLAQERELEQTRVLISDQSQDGELKELLEEKENALIMMEEEMRQVNDANTELLRVNATLK 1026
Query: 315 SILKNVSNILSDTASHVEITKKLLKS-QEESKVLS 416
S LKN I+ + S ++ +++ S + +K+L+
Sbjct: 1027 SQLKNYDMIIVEQTSQLKEKNRIIASLTKATKILN 1061
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,552
Number of Sequences: 5004
Number of extensions: 50157
Number of successful extensions: 192
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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