Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18g06
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.58 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   3.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 449 KASDRIFRNKKESWSVGPHCCSQSNSGPGFLSFEK 553
           K +D+    K+ +W+V     +Q+ +GP FL+ ++
Sbjct: 481 KPNDKSQVIKQNTWTVFRDAITQTGTGPAFLTIKE 515


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 403 DSSWLFSNFFVISTCEAVSLKMLET 329
           DS+W+ +N F+I T +     MLE+
Sbjct: 30  DSNWIITNSFIIFTMQ-TGFGMLES 53


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 591 NEGLRWLQSIFCFFSK 544
           NE   W Q+ FC+F +
Sbjct: 528 NEIYNWFQNTFCYFRR 543


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 288 FNLIKKSNKSILKNVSNILSDTASHVEITKKLLKS 392
           +NL+KK      K +   + D+ S+V+ + K  KS
Sbjct: 91  YNLLKKVIPEAFKEIGVEMIDSCSNVDSSDKCEKS 125


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 318 ILKNVSNILSDTASHVEITKKLLKSQEESKVLSKPLEKPQVERIKR 455
           +L NV   L     H  I+KK+ K+ E   +  +PL   + + IKR
Sbjct: 102 LLINVVKYLG--GKHKFISKKIKKTMENKDITKRPLPN-ESQLIKR 144


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
 Frame = +3

Query: 138 LTKLHKMEGIDDIEHIASDHDQLISVISK-----LDKTQHII--EPTR--NEPTNINSEF 290
           +T + +   I  IEH++ DH+   S +++     +  TQ ++   P R   EPT+++ E 
Sbjct: 660 VTNMDQYNSILMIEHLSPDHNGNYSCVARNLAAEVSHTQRLVVHVPPRWIVEPTDVSVER 719

Query: 291 N 293
           N
Sbjct: 720 N 720


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 462 LSLALYAQPVVFLMVYLRPWTLPGFSAIF 376
           L +A+   P    ++    W+LPGF   F
Sbjct: 233 LLVAVLVMPFAVYVLVNGSWSLPGFVCDF 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,474
Number of Sequences: 438
Number of extensions: 3096
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)