Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18g01
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1...   100   2e-22
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    29   0.62 
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    28   1.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   3.3  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   5.8  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   7.7  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   7.7  

>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  100 bits (239), Expect = 2e-22
 Identities = 40/113 (35%), Positives = 68/113 (60%)
 Frame = +2

Query: 290 RNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGA 469
           R +    FCK+FN +TA      P+P ++ V   R++   IH PP S+ + +   + KG+
Sbjct: 31  RGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFTFTIHTPPTSWLISKTLDLEKGS 90

Query: 470 MEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEIV 628
             P+ +  G+++LKH+YEIAK+K  DP L+   L  +C  +I TA++ G+++V
Sbjct: 91  SSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLCKSVIGTAKSMGVKVV 143


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 194 PFSWISIELPI*TFYY-NFK*CFETNCPIKSI*VRLSFKYFSLKNSSSLQLAL 39
           P S + I  P+ TF   NF+  +  N  +  + + ++ KY+SL +SS+ Q AL
Sbjct: 545 PTSTVDIRSPLGTFAERNFQTIYHPNKIVYMLPLNITQKYWSLDSSSTAQRAL 597


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 636 NSLTISIPHVLAVAINIVQISCSDFHSKGGSCCFIF 529
           +S  I+ PH  A AI  +    SDF SK  S    F
Sbjct: 380 HSCAINFPHTAATAIQYLLSHISDFQSKSASSVLSF 415


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 626 LFQYHMFLQWLSTLYKFLAAISTLKE 549
           LF  H F +WL TLY++L       E
Sbjct: 609 LFADHFFPKWLETLYQWLTEAPNFDE 634


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 675 FFLPRNSPYSLGSNSLTISIPHVLAVAI--NIVQISCSDFHSKGGS 544
           F  P N  +S  + +L    PH ++  I  NIVQ + S   + G S
Sbjct: 386 FNAPSNQEFSANATALVSPGPHSVSTTINTNIVQATISQSSTSGSS 431


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 434 FLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQE 577
           F+K  AG   GA+ PVRE    +  +   E+ +  ++    E K ++E
Sbjct: 447 FVKNVAGHLSGAISPVRERQYGVFTRVDSELGRRIREATEAEVKKMEE 494


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 617 YHMFLQWLSTLYKFLAAISTLKEDPAVLFLLFHTNASKLFSH 492
           YH  L+W+ T +  L        +PAVL  L H   S++ +H
Sbjct: 180 YHEALEWIRTEFGVLVEHVFSLSNPAVLVQLDHL-VSQILAH 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,746
Number of Sequences: 5004
Number of extensions: 59434
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)