Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18g01
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0315 - 16686830-16687297 104 7e-23
03_01_0152 - 1211859-1211903,1212247-1212443,1213469-1213532,121... 87 1e-17
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159... 31 1.1
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 29 2.6
01_06_0382 - 28884450-28884662,28884681-28885469 29 3.4
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 29 4.5
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 28 6.0
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 28 6.0
>10_08_0315 - 16686830-16687297
Length = 155
Score = 104 bits (249), Expect = 7e-23
Identities = 47/114 (41%), Positives = 69/114 (60%)
Frame = +2
Query: 296 INIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAME 475
+N+ AFCKDFN +T K P+ + D ++ V+ P S+FLK+AAGI +
Sbjct: 42 LNLMAFCKDFNARTQKYKAETPMQVTLTAYKDSTFEFVVKSPSVSWFLKKAAGIETASGR 101
Query: 476 PVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEIVKEL 637
P ++L+H+YEIAK+KQ DP + SL+ +C +I TA + GIEIVK+L
Sbjct: 102 PGHTVVSSLSLRHVYEIAKLKQSDPYCKHMSLEALCKSIIGTANSMGIEIVKDL 155
>03_01_0152 -
1211859-1211903,1212247-1212443,1213469-1213532,
1213630-1213802,1213889-1214075
Length = 221
Score = 87.0 bits (206), Expect = 1e-17
Identities = 45/112 (40%), Positives = 65/112 (58%)
Frame = +2
Query: 290 RNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGA 469
+ +NI +FCK++N KTA K G +P + V D+S+ ++ PPAS L +AAGI KG+
Sbjct: 89 KGVNIMSFCKEYNAKTAE-KAGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGIEKGS 147
Query: 470 MEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEI 625
EP RE GK+T + IA+ K P L KS+ ++ TA GIE+
Sbjct: 148 KEPQREKVGKVTADQVRTIAQEKL--PDLNCKSIDSAMRIIAGTAANMGIEV 197
>11_06_0361 - 22711200-22712180,22712523-22712729,22715205-22715903,
22717848-22717979,22720422-22721180,22721241-22721453
Length = 996
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 494 GKITLKHLYEIAKIKQQDPP-LEWKSLQEICTMLIATARTCGIEIVKELDPKEYGEFLGR 670
GK LK L + ++++ + WK++QE+C+ + + + LD E+G R
Sbjct: 916 GKAFLKELKNLTQLRKLGVSGINWKNIQELCSAVSCHRYLESLSV--RLDKDEHGSSDDR 973
Query: 671 KKED 682
KED
Sbjct: 974 LKED 977
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 455 ISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATA 604
I K + +RE +GKI L+ IA+I D P EW + + + T+
Sbjct: 94 IRKSLLLNMREENGKIALQLAALIARIVYFDYPKEWSDVFSVLAQQLQTS 143
>01_06_0382 - 28884450-28884662,28884681-28885469
Length = 333
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 344 IKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSG 496
+K +P P V V+ DR++ +V H P F G G E + G
Sbjct: 209 LKTDLPYPNGVAVSRDRTHLVVAHTVPCQAFRYWLRGTKAGEYELFADLPG 259
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 323 FNEKTANIKQG-IPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRET 490
+N + +++Q I T + VNS R+ H+ +HQPP + K P+ ++
Sbjct: 727 WNSGSQSVRQAEIKRATTINVNS-RARHINLHQPPQEKYQKSTFSYDDPTSAPIYQS 782
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = +2
Query: 434 FLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPLEWKSLQEICTMLIATARTC 613
FL AA P + GK+ +L E+A DP L E+ T L A AR C
Sbjct: 337 FLHHAAATGARGETPRLKKVGKLVDLYLAEVAP----DPSLRPAMFVELATALPAAARDC 392
Query: 614 GIEIVKELD 640
+ + +D
Sbjct: 393 HDALYRAID 401
>03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 356 IPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSGKIT 505
I L TRV+ + D+ + LV+H+ + + + + PVRE S IT
Sbjct: 957 IILDTRVQFHQDQLHFLVVHETQIAIY--ETTKLEPVKQWPVRENSSPIT 1004
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,749,395
Number of Sequences: 37544
Number of extensions: 327413
Number of successful extensions: 835
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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