Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18g01
         (682 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005002-1|AAH05002.1|  192|Homo sapiens mitochondrial ribosomal...   130   4e-30
AK223112-1|BAD96832.1|  192|Homo sapiens mitochondrial ribosomal...   130   4e-30
AF151871-1|AAD34108.1|  192|Homo sapiens CGI-113 protein protein.     130   4e-30
AB049638-1|BAB40843.1|  192|Homo sapiens mitochondrial ribosomal...   130   4e-30
BC108277-1|AAI08278.1|  166|Homo sapiens mitochondrial ribosomal...   129   1e-29
AB051338-1|BAB54928.1|   61|Homo sapiens mitochondrial ribosomal...    63   8e-10

>BC005002-1|AAH05002.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 192

 Score =  130 bits (314), Expect = 4e-30
 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
 Frame = +2

Query: 287 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 466
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 467 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 640
           A +  +E +G +TLKH+YEIA+IK QD    L+   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 641 PKEYGEF 661
            +E   F
Sbjct: 161 SEELAAF 167


>AK223112-1|BAD96832.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 isoform a variant protein.
          Length = 192

 Score =  130 bits (314), Expect = 4e-30
 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
 Frame = +2

Query: 287 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 466
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 467 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 640
           A +  +E +G +TLKH+YEIA+IK QD    L+   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 641 PKEYGEF 661
            +E   F
Sbjct: 161 SEELAAF 167


>AF151871-1|AAD34108.1|  192|Homo sapiens CGI-113 protein protein.
          Length = 192

 Score =  130 bits (314), Expect = 4e-30
 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
 Frame = +2

Query: 287 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 466
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 467 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 640
           A +  +E +G +TLKH+YEIA+IK QD    L+   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 641 PKEYGEF 661
            +E   F
Sbjct: 161 SEELAAF 167


>AB049638-1|BAB40843.1|  192|Homo sapiens mitochondrial ribosomal
           protein L11 (L11mt) protein.
          Length = 192

 Score =  130 bits (314), Expect = 4e-30
 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
 Frame = +2

Query: 287 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 466
           QR ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 41  QRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 100

Query: 467 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 640
           A +  +E +G +TLKH+YEIA+IK QD    L+   L  +   +I +AR+ GI +VK+L 
Sbjct: 101 ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 160

Query: 641 PKEYGEF 661
            +E   F
Sbjct: 161 SEELAAF 167


>BC108277-1|AAI08278.1|  166|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 166

 Score =  129 bits (311), Expect = 1e-29
 Identities = 61/127 (48%), Positives = 87/127 (68%), Gaps = 2/127 (1%)
 Frame = +2

Query: 287 QRNINIAAFCKDFNEKTANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKG 466
           +R ++I  FCK+FNE+T +IK+GIPLPT++ V  DR++ + I QP  SYFLK AAGI KG
Sbjct: 15  ERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKG 74

Query: 467 AMEPVRETSGKITLKHLYEIAKIKQQDP--PLEWKSLQEICTMLIATARTCGIEIVKELD 640
           A +  +E +G +TLKH+YEIA+IK QD    L+   L  +   +I +AR+ GI +VK+L 
Sbjct: 75  ARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLS 134

Query: 641 PKEYGEF 661
            +E   F
Sbjct: 135 SEELAAF 141


>AB051338-1|BAB54928.1|   61|Homo sapiens mitochondrial ribosomal
           protein L11 protein.
          Length = 61

 Score = 63.3 bits (147), Expect = 8e-10
 Identities = 29/46 (63%), Positives = 35/46 (76%)
 Frame = +2

Query: 410 IHQPPASYFLKQAAGISKGAMEPVRETSGKITLKHLYEIAKIKQQD 547
           I QP  SYFLK AAGI KGA +  +E +G +TLKH+YEIA+IK QD
Sbjct: 2   IGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQD 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,066,502
Number of Sequences: 237096
Number of extensions: 1863304
Number of successful extensions: 3645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3645
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)