Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18g01
         (682 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094892-1|AAM11245.1|  196|Drosophila melanogaster RE67638p pro...   217   2e-56
AE014297-1856|AAF55063.1|  196|Drosophila melanogaster CG3351-PA...   217   2e-56
AY051831-1|AAK93255.1|  703|Drosophila melanogaster LD33749p pro...    29   5.9  

>AY094892-1|AAM11245.1|  196|Drosophila melanogaster RE67638p
           protein.
          Length = 196

 Score =  217 bits (529), Expect = 2e-56
 Identities = 99/174 (56%), Positives = 127/174 (72%)
 Frame = +2

Query: 155 MSKSVARLKSMRKVAEKIDHSSKMRTNIXXXXXXXXXXXXXXXXQRNINIAAFCKDFNEK 334
           MSK+  +LKS++K  E++ H+SK++TNI                QR INIAAFCKDFN K
Sbjct: 1   MSKAAGKLKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFNAK 60

Query: 335 TANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSGKITLKH 514
           TA +K+G+PLP R+ VNSDRSY L IH PPA++FLKQAAGI +G M P +E +G ITLKH
Sbjct: 61  TAEMKEGVPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITLKH 120

Query: 515 LYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEIVKELDPKEYGEFLGRKK 676
           LYEIA IK QDPP    ++Q++C MLI+ ARTCGI++V+E+DP  YGEFL  +K
Sbjct: 121 LYEIAAIKIQDPPNVLLTMQQMCEMLISIARTCGIKVVREIDPAAYGEFLEERK 174


>AE014297-1856|AAF55063.1|  196|Drosophila melanogaster CG3351-PA
           protein.
          Length = 196

 Score =  217 bits (529), Expect = 2e-56
 Identities = 99/174 (56%), Positives = 127/174 (72%)
 Frame = +2

Query: 155 MSKSVARLKSMRKVAEKIDHSSKMRTNIXXXXXXXXXXXXXXXXQRNINIAAFCKDFNEK 334
           MSK+  +LKS++K  E++ H+SK++TNI                QR INIAAFCKDFN K
Sbjct: 1   MSKAAGKLKSLKKTVERVTHTSKLKTNIPAGMAAAGPPLGPMLGQRAINIAAFCKDFNAK 60

Query: 335 TANIKQGIPLPTRVKVNSDRSYHLVIHQPPASYFLKQAAGISKGAMEPVRETSGKITLKH 514
           TA +K+G+PLP R+ VNSDRSY L IH PPA++FLKQAAGI +G M P +E +G ITLKH
Sbjct: 61  TAEMKEGVPLPCRISVNSDRSYDLAIHHPPATFFLKQAAGIQRGTMTPGKEVAGMITLKH 120

Query: 515 LYEIAKIKQQDPPLEWKSLQEICTMLIATARTCGIEIVKELDPKEYGEFLGRKK 676
           LYEIA IK QDPP    ++Q++C MLI+ ARTCGI++V+E+DP  YGEFL  +K
Sbjct: 121 LYEIAAIKIQDPPNVLLTMQQMCEMLISIARTCGIKVVREIDPAAYGEFLEERK 174


>AY051831-1|AAK93255.1|  703|Drosophila melanogaster LD33749p
           protein.
          Length = 703

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +2

Query: 419 PPASYFLKQA---AGISKGAMEPVRETSGKITLKHLYEIAKIKQQDPPL 556
           P    F K+A   A ++K  +E +RE + KIT+ +++E  K  +  PP+
Sbjct: 230 PLTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFE-PKEGETSPPI 277


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,350,282
Number of Sequences: 53049
Number of extensions: 563613
Number of successful extensions: 1179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)