Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f23
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.8  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   7.8  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.8  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 480  YIIAFVLYQRHNKVFSS*EHINLCTSICNYYL 385
            Y+  +V+Y  H  V +S E++N+ TS+  Y+L
Sbjct: 1071 YLPDYVIY--HELVLTSKEYMNIVTSVDPYWL 1100


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 150 NKMRHIKISSIMMTLNASYLWFKKYEQKFY 61
           NK+R  +I+S + T+  +YL F   E +++
Sbjct: 110 NKLRTSRIASKIRTVQVAYLDFTSLESRYF 139


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 248 LSHLIFCDSLHSV*KLCNINCNVNKKFTTVFRTKLYGVFYC 370
           LS    C  L++V ++   N  V   F TV+R++ YG+  C
Sbjct: 449 LSRNFKCIDLNNVPEIIK-NAKVESSFGTVYRSERYGLRGC 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,159
Number of Sequences: 5004
Number of extensions: 55441
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)