Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f23
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0480 + 18567759-18567956,18568140-18569226,18570025-18570380     29   2.7  
11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480     28   8.1  

>07_03_0480 + 18567759-18567956,18568140-18569226,18570025-18570380
          Length = 546

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 480 IGNKKIIKIDRC*EEDCNSYLANTELPCYSLHT 578
           I +KK IK+  C   DC S++ + + PC ++ T
Sbjct: 468 IADKKGIKLRFCSLRDCESHIKSLDRPCENIRT 500


>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
          Length = 910

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 155 CKSLHPV*NFCSYFLNHKCDAFSVILIEQIFLSHLIFCDSLH 280
           C SL  V  F S  + H CD F   +++++  SH++  + LH
Sbjct: 800 CPSLATVSQFPSLTVLHVCDPFKEEILQRLVNSHMML-EELH 840


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,790,853
Number of Sequences: 37544
Number of extensions: 263813
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)