Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f23
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AJ561206-1|CAD99208.1|   71|Caenorhabditis elegans NAS-13 protei...    29   4.2  
Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical p...    27   9.7  

>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical protein
            K02C4.3 protein.
          Length = 1307

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 22/81 (27%), Positives = 40/81 (49%)
 Frame = -2

Query: 315  TLQLILHNFYTECKLSQKIR*DRKICSIRMTLNASHLWFKKYEQKFYTGCKLLQKNKMRH 136
            TLQLI   F+   K  +++R +  I  +  ++   H W K Y ++F     L +   + H
Sbjct: 1161 TLQLIDMEFHLS-KNERRVRFEDIIREVVSSVCIIHHWSKSYSKEFQNEINLKELMGLLH 1219

Query: 135  IKISSIMMTLNASYLWFKKYE 73
            +K+   M++L +  +   KYE
Sbjct: 1220 LKV-EFMVSLTSFEVADPKYE 1239


>Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical
           protein T10C6.2 protein.
          Length = 369

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 396 NYYLNNLVIQ*NTPYNLVLKTVVNF 322
           NYY+NN+V Q + P ++  KTVV F
Sbjct: 177 NYYVNNVVSQKSYPISMENKTVVYF 201


>Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical
           protein F15A2.3 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 489 YSLYIIAFVLYQRHNKVFSS*EHINLCTSICNYYLNNLVIQ*NTPYNLVLKTVVNFLFTL 310
           Y   +IAF   ++ NK+ S+     +  + C   +N L+IQ   P+ + +     FL++ 
Sbjct: 201 YMSPLIAFHYRRKINKILSTNTGQRIPVAYCKQLINGLLIQTLIPFCVYIPPYSYFLYS- 259

Query: 309 QLILH-NFYTECKLS 268
           QL  H N Y E  L+
Sbjct: 260 QLSGHSNLYFEYLLN 274


>AJ561206-1|CAD99208.1|   71|Caenorhabditis elegans NAS-13 protein
           protein.
          Length = 71

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 1   IIIE*IFLSHLI-FLQKLTSCIKLLFIFFEPQI 96
           II + +F+S +  FL   T C KL  IFF+P I
Sbjct: 9   IISQRVFISPVFCFLHFFTDCSKLCSIFFDPSI 41


>Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical
           protein F13H10.4c protein.
          Length = 792

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = -2

Query: 306 LILHNFYTECKLSQKIR*DRKICSIRMTLNASHLWFKKYEQKFYTGCKLLQKNKMRHIKI 127
           +ILH+F TE     K      I  IR     S+ + KKYE  F    K   K +++  K+
Sbjct: 293 IILHSFRTEKLKGMKPEEFTNILRIR-----SYNFNKKYENVFQLAGKNYTKTQLKMAKV 347

Query: 126 SSIMMTLNASYLWF 85
           S   M  +  Y W+
Sbjct: 348 SLSNMLGSVGY-WY 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,660
Number of Sequences: 27780
Number of extensions: 309327
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)