Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f12
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   0.93 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   0.93 
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    27   1.6  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   1.6  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    26   3.8  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.6  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   8.7  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 516 RPQNRRSARTSLSDNAFPRFLLVITPP 596
           RPQ +RS+   LS +AF +F+   +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
 Frame = +1

Query: 1    IDLHCYIKTNITSQFGPLTCMRL-TGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDD- 174
            +D+   I+  + S   PLT +   TG+ G    N    I   Y  Y ++T     +  + 
Sbjct: 1669 MDMRFIIELLLGSDDSPLTLVGTGTGKSGKLVCNLYKTILKHYVHYGLSTSVPLYTSLEK 1728

Query: 175  -SLVS----PPPPAHPDWDAVSPLLSLTFKKE 255
             +L+S     PPP H ++D  + +++L F+KE
Sbjct: 1729 HNLISRSPSSPPPIHTNFDTNADIITL-FEKE 1759


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 561 HCLTKKFGH--FSYFEGEFLFLGTFTAKEIKKRAL 463
           + L    GH   S+  GE  F GT+ A+E K RAL
Sbjct: 319 YMLAASLGHDRSSFLVGEAFFYGTYGARENKLRAL 353


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = +1

Query: 19  IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPP 198
           I+ +    +    C  +   P T DD+ +Y       EY  +T  V     D L S P P
Sbjct: 403 IRVSSDKDYDSYACHEVVSNPSTLDDDYNYMFVCPPEEYTYSTDNVRTDSLD-LQSLPTP 461

Query: 199 AHPDWDAV 222
                ++V
Sbjct: 462 TLEQLESV 469


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 505 PWNIHGKRNQKARSGKSLD-LLARESRKGRRE 413
           PW +  K   K R GK+++ LL R+  +G+ +
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKEK 317


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = -2

Query: 205 GEQEVEVILKNHHLRQRQFAW*-CRTRCK*RQYCNPCCRHKCRARR*GACRSKVQIDL*C 29
           G++++  +LK H  +        C   C     C   C++KC     G C   + I   C
Sbjct: 452 GKEDISFLLKGHERKSCSDPIPTCENICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRC 511


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 160 VSGDDSLVSPPPPAHPDWDAVSPLLSL 240
           VS  +S+VSPPP   P   A +P  SL
Sbjct: 158 VSAPNSMVSPPPSFQPP-SAAAPATSL 183


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 157 RQFAW*CRTRCK*RQYCNPCCRHK 86
           RQFA  CR RC+  +YC+  C+H+
Sbjct: 493 RQFAK-CR-RCRRTKYCSKECQHQ 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,990
Number of Sequences: 5004
Number of extensions: 48189
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)