Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f12
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1024 - 25449163-25449824,25451882-25452191                       29   2.2  
06_01_0087 + 695443-695655,696669-696983                               29   2.2  
09_06_0142 - 21107878-21109104                                         29   2.9  
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928...    28   6.8  
09_06_0245 - 21833622-21833901,21833988-21834059,21834152-218342...    27   8.9  
01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574           27   8.9  

>12_02_1024 - 25449163-25449824,25451882-25452191
          Length = 323

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +1

Query: 82  GTYDDNTDYNIA---VIYSEYDITTQTVF--VSGDDSLVSPPPPAHP 207
           GT+D   D  +A   V    Y +  +T F   +G+D L  PPPPA P
Sbjct: 186 GTFDTALDAALAYDAVSRRLYGLNAKTNFPAAAGEDDLPPPPPPAKP 232


>06_01_0087 + 695443-695655,696669-696983
          Length = 175

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +1

Query: 169 DDSLVSPPPPAH---PDWDAVSPL 231
           DD L  PPPPA     DW+A +PL
Sbjct: 26  DDELPPPPPPASGSGEDWEATTPL 49


>09_06_0142 - 21107878-21109104
          Length = 408

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 19  IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIA 117
           I   +   FG L C+ + GEPG Y   T + +A
Sbjct: 259 INRALERHFGDLPCVEVIGEPGRYFAETAFTLA 291


>10_08_0666 -
           19691985-19692216,19692327-19692404,19692508-19692837,
           19692913-19693158,19693224-19693483,19694469-19695023
          Length = 566

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 520 GRVFVPWNIHGKRNQKARSGKSL 452
           GR  VPW++HGK    +R+ +++
Sbjct: 253 GRCLVPWHLHGKHFPSSRTRRAV 275


>09_06_0245 -
           21833622-21833901,21833988-21834059,21834152-21834231,
           21834366-21835109,21835212-21835547
          Length = 503

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 184 SPPPPAHPDWDAV 222
           +PPPPAHPD  A+
Sbjct: 91  APPPPAHPDQPAI 103


>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
          Length = 212

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 160 VSGDDSLVSPPPPAH 204
           VS  D+LV+PPPP H
Sbjct: 156 VSAGDALVAPPPPPH 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,672,097
Number of Sequences: 37544
Number of extensions: 355144
Number of successful extensions: 1262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)