Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f12
         (614 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    24   4.5  
AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding pr...    23   7.8  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   7.8  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 172 DSLVSPPPPAHPDWDAVSP 228
           D + SPPPP  P   ++SP
Sbjct: 778 DGIGSPPPPPPPPPSSLSP 796


>AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding
           protein OBPjj83a protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 82  GTYDDNTDYNIAVIYS 129
           G YDD    NIA++YS
Sbjct: 211 GLYDDEQGPNIALLYS 226


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1009

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 555  LTKKFGHFSYFEGEFLFLGTFTAKEIKKRALVNHLICWQ-ESPE 427
            ++++FG   +F  +FL    F A ++ +  L    +C   E PE
Sbjct: 878  ISRRFGGVDFFLSQFLSSHGFYAYQLHRMQLTGSPLCDACEEPE 921


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,914
Number of Sequences: 2352
Number of extensions: 12545
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)