Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f12
         (614 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052043-1|AAK93467.1|  704|Drosophila melanogaster LP05645p pro...    31   0.93 
AE014296-1543|AAF50352.1|  551|Drosophila melanogaster CG5735-PA...    31   0.93 
AE014296-1542|AAN11975.1|  704|Drosophila melanogaster CG5735-PD...    31   0.93 
AE014296-1541|AAF50351.1|  704|Drosophila melanogaster CG5735-PC...    31   0.93 
AE014296-1540|AAF50350.1|  704|Drosophila melanogaster CG5735-PB...    31   0.93 
AY071729-1|AAL49351.1|  587|Drosophila melanogaster RH44874p pro...    30   2.2  
AE014134-355|AAF51292.1|  587|Drosophila melanogaster CG15385-PA...    30   2.2  
AY928610-1|AAX28843.1|  377|Drosophila melanogaster gag protein ...    28   8.7  
AJ001516-2|CAC79667.1|  373|Drosophila melanogaster gag protein ...    28   8.7  

>AY052043-1|AAK93467.1|  704|Drosophila melanogaster LP05645p
           protein.
          Length = 704

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   RPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHH 146
           +PP LHQ QH +       H  +++ + L  QH  Q   +L  + HHH
Sbjct: 173 KPPQLHQQQHQQQ---HQQHQQHQQQQQL-HQHQQQLSPNLSALHHHH 216


>AE014296-1543|AAF50352.1|  551|Drosophila melanogaster CG5735-PA,
           isoform A protein.
          Length = 551

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   RPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHH 146
           +PP LHQ QH +       H  +++ + L  QH  Q   +L  + HHH
Sbjct: 20  KPPQLHQQQHQQQ---HQQHQQHQQQQQL-HQHQQQLSPNLSALHHHH 63


>AE014296-1542|AAN11975.1|  704|Drosophila melanogaster CG5735-PD,
           isoform D protein.
          Length = 704

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   RPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHH 146
           +PP LHQ QH +       H  +++ + L  QH  Q   +L  + HHH
Sbjct: 173 KPPQLHQQQHQQQ---HQQHQQHQQQQQL-HQHQQQLSPNLSALHHHH 216


>AE014296-1541|AAF50351.1|  704|Drosophila melanogaster CG5735-PC,
           isoform C protein.
          Length = 704

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   RPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHH 146
           +PP LHQ QH +       H  +++ + L  QH  Q   +L  + HHH
Sbjct: 173 KPPQLHQQQHQQQ---HQQHQQHQQQQQL-HQHQQQLSPNLSALHHHH 216


>AE014296-1540|AAF50350.1|  704|Drosophila melanogaster CG5735-PB,
           isoform B protein.
          Length = 704

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 3   RPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHH 146
           +PP LHQ QH +       H  +++ + L  QH  Q   +L  + HHH
Sbjct: 173 KPPQLHQQQHQQQ---HQQHQQHQQQQQL-HQHQQQLSPNLSALHHHH 216


>AY071729-1|AAL49351.1|  587|Drosophila melanogaster RH44874p
           protein.
          Length = 587

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 64  RLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSL 180
           RL  E    D +TDY   V+Y+  D+T Q  F  G  SL
Sbjct: 498 RLAFEVYRSDAHTDYYFRVVYNGKDVTQQIDFCEGGKSL 536


>AE014134-355|AAF51292.1|  587|Drosophila melanogaster CG15385-PA
           protein.
          Length = 587

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 64  RLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSL 180
           RL  E    D +TDY   V+Y+  D+T Q  F  G  SL
Sbjct: 498 RLAFEVYRSDAHTDYYFRVVYNGKDVTQQIDFCEGGKSL 536


>AY928610-1|AAX28843.1|  377|Drosophila melanogaster gag protein
           protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 139 ITTQTVFV-SGDDSLVSPPPPAHPDWDAVSPLLSLTFK 249
           I++QT  + SG+DS    P P  P    +S L+S TFK
Sbjct: 46  ISSQTPNMDSGNDSARPTPSPLAPTVSGISSLISTTFK 83


>AJ001516-2|CAC79667.1|  373|Drosophila melanogaster gag protein
           protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 139 ITTQTVFV-SGDDSLVSPPPPAHPDWDAVSPLLSLTFK 249
           I++QT  + SG+DS    P P  P    +S L+S TFK
Sbjct: 46  ISSQTPNMDSGNDSARPTPSPLAPTVSGISSLISTTFK 83


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,483,073
Number of Sequences: 53049
Number of extensions: 586137
Number of successful extensions: 1921
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1921
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)