Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f12
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    28   4.6  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    28   4.6  
AF139520-1|AAD33830.1|  176|Caenorhabditis elegans warthog prote...    28   6.1  
AF000298-2|AAC48258.1|  176|Caenorhabditis elegans Warthog (hedg...    28   6.1  

>Z81571-7|CAB04620.1|  272|Caenorhabditis elegans Hypothetical
           protein M01G12.9 protein.
          Length = 272

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/31 (35%), Positives = 23/31 (74%)
 Frame = +1

Query: 472 LFDFFCRECSKEQKLALKIGEVPELLCQTML 564
           + D++  + +K+ K+ +KIGE+P++L +T L
Sbjct: 8   VIDYYHSKINKDSKMEIKIGELPKVLNKTYL 38


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 493 HGKRNQKARSGKSLDLLARESRKGRRESGLQQ 398
           H K  QKARS  +L+ LA++++K + E   Q+
Sbjct: 97  HSKTRQKARSSVTLEKLAQKNQKMKEELKKQE 128


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 493 HGKRNQKARSGKSLDLLARESRKGRRESGLQQ 398
           H K  QKARS  +L+ LA++++K + E   Q+
Sbjct: 205 HSKTRQKARSSVTLEKLAQKNQKMKEELKKQE 236


>AF139520-1|AAD33830.1|  176|Caenorhabditis elegans warthog protein
           WRT-5 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +1

Query: 376 IASYLSEFVVGHSLGDPFWT-LLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPELLC 552
           +AS+L  FV G +L D      +P    ++++   +  C   S  +K   K  E PE   
Sbjct: 7   MASWLMAFVAGSTLADYCGDHKVPFGMEVHKNGNVNILCSRPSCHEK---KYAECPERAT 63

Query: 553 QTMLSLGFSWL 585
            T  S   SW+
Sbjct: 64  STTCSTNSSWV 74


>AF000298-2|AAC48258.1|  176|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 5, isoform a protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +1

Query: 376 IASYLSEFVVGHSLGDPFWT-LLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPELLC 552
           +AS+L  FV G +L D      +P    ++++   +  C   S  +K   K  E PE   
Sbjct: 7   MASWLMAFVAGSTLADYCGDHKVPFGMEVHKNGNVNILCSRPSCHEK---KYAECPERAT 63

Query: 553 QTMLSLGFSWL 585
            T  S   SW+
Sbjct: 64  STTCSTNSSWV 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,538
Number of Sequences: 27780
Number of extensions: 292367
Number of successful extensions: 882
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)