Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f12
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 163 SGDDSLVSPPPPAHP 207
           SG +  V+P PP HP
Sbjct: 88  SGQNKAVAPYPPNHP 102


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 163 SGDDSLVSPPPPAHP 207
           SG +  V+P PP HP
Sbjct: 88  SGQNKAVAPYPPNHP 102


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 235 SLTFKKEFVRN-GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFV 402
           SL   +  +R  GL CG   G A  I A +              LPD I +YL++FV
Sbjct: 289 SLNAARMLIRQEGLLCGGSSG-AALIAALKIAKDIPEEKRMVIILPDGIRNYLTKFV 344


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 130 EYDITTQTVFVSGD-DSLVSPPPP 198
           EY  + Q  FV+ D D  + PPPP
Sbjct: 357 EYSPSVQHEFVTFDLDEPLPPPPP 380


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 63  HAGQRSKLTCNV 28
           H G+R+ LTC+V
Sbjct: 623 HLGERTTLTCSV 634


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 358 RTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVI 459
           R L ++++S  + +  G    DP  +  P D +I
Sbjct: 640 RHLKEEVSSIETNYECGLRFEDPMISFQPGDTII 673


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,264
Number of Sequences: 438
Number of extensions: 3638
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)