Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f10
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.5  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   1.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   2.5  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   5.9  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   5.9  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   7.7  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    25   7.7  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   7.7  

>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -2

Query: 455 LYNEAVGVYSLKRSRLTAWMKF---KRVPIGHVYLCKIM 348
           L NEA+ +YS  ++ +  WM F   ++ PI H+   K +
Sbjct: 133 LNNEALKLYSCAKAGICRWMAFHFLEQEPIDHINFTKFL 171


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 441 GLIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILCRR 566
           G+ + VL L         RDY+   N  +V+ K+C SIL R+
Sbjct: 145 GINVSVLTLNSNFYVPVYRDYLMALNINSVSKKSCVSILSRK 186


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 559  HKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINT 455
            HKML + L+ +  E   ++ S+  +L + SH+I T
Sbjct: 973  HKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRT 1007


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 159 ETFQRLRNKNLTTLNKIKYDSELLLHYL 242
           + ++    +NLT  N+++ D +  +HYL
Sbjct: 146 DVYEFFGGENLTLFNQVRVDCQCYIHYL 173


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 117 PTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKN 266
           P +L S+  K   TE   R  N  LT L     + E  + Y  DD  NKN
Sbjct: 517 PVVLYSLQSK--DTEVRSRALNLILTFLELRNENLEFSIIYGMDDNDNKN 564


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 132 SISKKISTTETFQRLR-NKNLTTLNKIKYDSELLLHYLYDDQQNKNS 269
           S+   ++   T Q+ R NK     ++I +D  LLLH+L+++  N  S
Sbjct: 129 SLPSHVAEDRTAQQYRQNKYQLHFSRITFD--LLLHFLFENVSNGGS 173


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
            subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 562  RHKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINTFIMRPSV 434
            ++ + +Q  K  L  F P++  ++S L H  H     +  PSV
Sbjct: 938  KYYLENQLSKPLLRIFEPILGEKASSLLHGDHTRTISMAAPSV 980


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -2

Query: 239 IMKQQFTIVFNFVQRCQ 189
           +++Q+ TI+FNF++R Q
Sbjct: 17  LIRQEDTIIFNFLERAQ 33


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 152 DDGDVSAPKKQKLDNAEQN*IR**TVASLFVR*SAE 259
           ++G +S+ KK++LD   +N ++   VASL  + + E
Sbjct: 80  NEGSISSKKKKRLDKYIENKLKKEEVASLIAKLAEE 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,896
Number of Sequences: 5004
Number of extensions: 26773
Number of successful extensions: 84
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)