Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f10
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0644 + 18337757-18337947,18339113-18339344                       28   4.5  
07_03_1766 + 29334576-29335790,29335865-29336362                       27   7.9  

>04_03_0644 + 18337757-18337947,18339113-18339344
          Length = 140

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 150 STTETFQRLRNKNLTTLN 203
           ++TE FQR+ N NLTT+N
Sbjct: 42  TSTERFQRMLNANLTTIN 59


>07_03_1766 + 29334576-29335790,29335865-29336362
          Length = 570

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +3

Query: 90  PLSMSKKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDD 251
           P  ++K       E ISK IS + T + L+N   T+   ++   E LL Y  DD
Sbjct: 73  PTDLAKAMFAVTSEKISKAISESSTLEELKNDKRTS-GALQNCKE-LLEYAVDD 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,171,429
Number of Sequences: 37544
Number of extensions: 143512
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)