Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18f10
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 30 1.0
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 29 2.3
AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical... 28 4.1
AF000265-12|ABQ13076.1| 302|Caenorhabditis elegans Hypothetical... 28 5.4
AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical... 28 5.4
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 27 7.1
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 27 7.1
AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical... 27 9.4
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +3
Query: 135 ISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSD 272
+ K+ +E +R+R ++ TT +KY+ EL+ + +D + ++
Sbjct: 376 VEKEARFSEEMERIRTESQTTSESLKYEHELVRKMMIEDMEKLEAE 421
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 105 KKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLY 245
K +T +L+S+ K+ TTE + + + I+YDS HY++
Sbjct: 83 KDETKLILKSVEDKLETTEIEGNVPKIDENLIENIQYDSGDQEHYIW 129
>AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical
protein Y39B6A.27 protein.
Length = 473
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +3
Query: 330 GASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILC--DECCKKELRDY 503
GA + Y VH S + P SQP + H+ LI + C +CC +R
Sbjct: 323 GALAVCIYCCLVHASTPFEAPMRPTSQP-SLLISHSYPLIFIISFFCGMSDCCINSVRSV 381
Query: 504 I 506
I
Sbjct: 382 I 382
>AF000265-12|ABQ13076.1| 302|Caenorhabditis elegans Hypothetical
protein C18E3.9b protein.
Length = 302
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 120 TLLESISKKI--STTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYA 278
+++ S+S++ S + + + KNL NK+K SE + + + K SDYA
Sbjct: 48 SIINSVSEQTLQSWIDFREEINKKNLLLRNKLKIPSEKIDDKYHTFPEKKQSDYA 102
>AF000265-11|AAK68199.1| 298|Caenorhabditis elegans Hypothetical
protein C18E3.9a protein.
Length = 298
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 120 TLLESISKKI--STTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYA 278
+++ S+S++ S + + + KNL NK+K SE + + + K SDYA
Sbjct: 48 SIINSVSEQTLQSWIDFREEINKKNLLLRNKLKIPSEKIDDKYHTFPEKKQSDYA 102
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 126 LESISKKISTTETFQRLRNKN-LTTLNKIKYDSELLLHYLYDDQQNKNS 269
LESI + +R R+KN L + K+K D+E L L DDQ+ ++
Sbjct: 818 LESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDA 866
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 126 LESISKKISTTETFQRLRNKN-LTTLNKIKYDSELLLHYLYDDQQNKNS 269
LESI + +R R+KN L + K+K D+E L L DDQ+ ++
Sbjct: 818 LESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDA 866
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 126 LESISKKISTTETFQRLRNKN-LTTLNKIKYDSELLLHYLYDDQQNKNS 269
LESI + +R R+KN L + K+K D+E L L DDQ+ ++
Sbjct: 818 LESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDA 866
>AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical
protein Y73B3A.7 protein.
Length = 205
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 183 KNLTTLNKIKYDSELLLHYLYDDQQNKN 266
KNL N+I ++ L+LH D+ NKN
Sbjct: 4 KNLLKKNRIVIEASLVLHNNNDNNNNKN 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,466,485
Number of Sequences: 27780
Number of extensions: 150409
Number of successful extensions: 439
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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