Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f07
         (506 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    24   0.90 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   2.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   2.7  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 155 FNDSESDY*PCKMPASCNC 211
           FND  S+Y  C +P + +C
Sbjct: 74  FNDYSSEYEKCDLPFNIDC 92


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 209 NYKTPAFCKVNSQIPNH 159
           N K P  CK+   IP H
Sbjct: 258 NVKIPVLCKLIQSIPTH 274


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 379 VVRLSKACELSNSTNLWLFGSKKFDLSSMTLTF 281
           VV LS    L  ST LW   +    L+S  +TF
Sbjct: 76  VVSLSTCSMLCGSTQLWPQPTGPVTLASRAVTF 108


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 107 LCRTY*FFTFXVYNILLIFNVKLWLICLP 21
           LC  Y ++ F ++ + L+F + ++   +P
Sbjct: 111 LCVYYFYYAFIIFTVHLLFLLCIYYFVVP 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,713
Number of Sequences: 336
Number of extensions: 2669
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)