Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18f07
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 26 2.8
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 26 3.7
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac... 25 4.9
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 4.9
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.5
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 25 6.5
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 8.6
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 8.6
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 25 8.6
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3... 25 8.6
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 8.6
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.6
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -3
Query: 243 NKFYVFHLVNQQL 205
NK+YV HLVNQQ+
Sbjct: 396 NKYYVRHLVNQQV 408
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 261 FVVHLKNKFYVFHLVNQQLQD 199
F +H N+ FHL++Q LQD
Sbjct: 721 FTLHFFNRHSPFHLISQFLQD 741
>SPAC16C9.02c |||S-methyl-5-thioadenosine
phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 496 KTLCSKENIFGDSGLVCTNTISPPF 422
+TLC++ N F +SG V + PF
Sbjct: 115 RTLCARPNTFFESGCVAHVSFGDPF 139
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 264 KITQPKKVNVMEDKSNFLLPNNQRFVELDSS 356
++T PK + +DK+ LLP N + + D S
Sbjct: 2 QVTIPKSTSKEDDKNRNLLPKNVKPIHYDLS 32
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 235 EFVLQVYNKIKSLSRKKLMSWKT 303
EFVL YN++ + +K LM++K+
Sbjct: 510 EFVLAAYNELIFIVKKDLMNFKS 532
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 6.5
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = +3
Query: 186 AKCRRLVIADSLNGKHRICSSGVQQNKITQPKKVNVMEDKSN-FLLPNNQRFVELDSSQA 362
A+C LV A+ NG+ + +T + SN + N ++DSS
Sbjct: 437 ARCELLVPANCKNGEPEVADDDAVDTSVTATDDFDASASSSNAYESYRNTYTDDMDSSSI 496
Query: 363 FDNLTTNEK 389
+ +N K
Sbjct: 497 YQTSLSNVK 505
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 24.6 bits (51), Expect = 8.6
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +3
Query: 150 KSSMIRNLTINLAKCRRLVIADSLNGKHRICSSGVQQNKITQPKKVNVMEDKSNFLLPNN 329
K S N +++ +R++ + LN RIC ++ QP+ N+++ S+ + +
Sbjct: 350 KISFYSNSSLSFPVLKRMITNEYLNSDVRICIQDDGVEQLMQPE--NILKISSDIVTQGS 407
Query: 330 QRFVELDSSQAFDNLTTNEKLY--AHYLSQAAW 422
+ + + L ++L+ + QA W
Sbjct: 408 ESSWRAKAETSEMQLKEAKRLFYELKQIHQALW 440
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 348 DSSQAFDNLTTNEKLYAHYLS 410
D AF LT + +YAHYLS
Sbjct: 292 DMLTAFRELTQDFPIYAHYLS 312
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 24.6 bits (51), Expect = 8.6
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 388 FSLVVRLSKACELSNSTNLWLFGSKKFD-LSSMTLTFFG*VILFCCTPEEQIL 233
FS+VVRL+ +L N L + S KF L + TL + G + T EE L
Sbjct: 372 FSIVVRLADGFKL-NDFRLVINNSNKFILLFANTLFYIGGLEAVSITTEESFL 423
>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 188
Score = 24.6 bits (51), Expect = 8.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 442 WYRPVLSHQRYSPCCIESLW 501
W PV+ H + P C E L+
Sbjct: 116 WNIPVVRHSKLKPLCTEELY 135
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 397 AYNFSLVVRLSKACELSNSTNLWLFGS 317
A+N V L + SNS +WLF S
Sbjct: 510 AFNHLQVCNLPELLRTSNSFGIWLFNS 536
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 265 KSLSRKKLMSW--KTSQIFYCQITKDSWSWIVRRL 363
K LS+ L S+ K IFY + KDS++ + RL
Sbjct: 1537 KCLSKSNLESFEAKLGSIFYQYLRKDSFAELTERL 1571
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,655
Number of Sequences: 5004
Number of extensions: 41097
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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