Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f07
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0510 + 23558111-23559613                                         32   0.23 
12_02_1261 + 27410921-27413401                                         29   1.6  
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086...    28   3.7  
11_06_0123 + 20334350-20334553,20335059-20335490,20336052-203361...    28   5.0  
03_06_0446 - 33985668-33985940,33986008-33986085,33986151-339862...    28   5.0  
07_03_1434 + 26529043-26529927,26530385-26530742,26530820-265310...    27   6.5  

>02_04_0510 + 23558111-23559613
          Length = 500

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
 Frame = +3

Query: 180 NLAKCRRLVIADSLNGKHRICSSGVQQNKITQPKKVNVMEDKSNFLLPNNQRF-VELDSS 356
           +LAKC R    ++L+  HR+ SSG + + +     +N++  KS  L   +Q F VE+  +
Sbjct: 298 SLAKCERF--EEALSVSHRMKSSGCKPDTLFYNSLINLL-GKSGHLFEASQVFRVEMPMN 354

Query: 357 QAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQTSPESPK 470
               NL T   + + +      +  L VL +   +S K
Sbjct: 355 GVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCK 392


>12_02_1261 + 27410921-27413401
          Length = 826

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 252 VQQNKITQPKK--VNVMEDKSNFLLPNNQRFVELDSSQAFDNLTTNEKLYAHYLSQAAWN 425
           V Q   TQ K+    +M++  +   P++Q     DS+         E+  + YLS    N
Sbjct: 197 VPQETPTQKKRSVAELMDNDDDKATPHHQ-----DSATTISKSNKRERKKSKYLSPPYTN 251

Query: 426 GGLIVLVQTSPESPK 470
            G I LVQ + +SPK
Sbjct: 252 LGGIALVQKASDSPK 266


>06_02_0206 +
           13005863-13005966,13006918-13007080,13008534-13008632,
           13008704-13008817,13009094-13009254,13009746-13009827,
           13009972-13010057,13011563-13011742,13011913-13012424,
           13012844-13013478
          Length = 711

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 228 KHRICSSGVQQNKITQPKKVNVMEDKSNFLLPNNQRFVELDSSQAFDNLTTNEKL 392
           KH   ++G+   ++ +PK V    DKS  + P   +  +  SS+A   +T  E+L
Sbjct: 291 KHDAIAAGIAV-RVEKPKSVQARGDKSPSIKPEGAKQPDQRSSEAASTVTPFEQL 344


>11_06_0123 +
           20334350-20334553,20335059-20335490,20336052-20336191,
           20336281-20336401,20337110-20337250,20337421-20337663
          Length = 426

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 214 SAITRRRHFARLIVRFRIIELLCY 143
           SA + R+H +R I+RF   E+ CY
Sbjct: 249 SAASTRKHMSRFILRFLPTEVTCY 272


>03_06_0446 -
           33985668-33985940,33986008-33986085,33986151-33986233,
           33986709-33986766,33987677-33987933,33988140-33988413
          Length = 340

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 131 CYLFIT*KFNDSESDY*P---CKMPASCNC*FTKWKT*NLFF 247
           C +F+T K N S     P   C   +SC+   +KW   N+FF
Sbjct: 258 CPIFVTSKMNFSGQQKDPRTICGTRSSCDSTVSKWMVRNIFF 299


>07_03_1434 +
           26529043-26529927,26530385-26530742,26530820-26531007,
           26531082-26531271,26531343-26531447,26531521-26531597,
           26531628-26531972
          Length = 715

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +3

Query: 282 KVNVME---DKSNFLLPNNQRFVELDSSQAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQT 452
           K+N +E   DK+ F   NN     LD+++ FD L      Y   + +A   G  + L  T
Sbjct: 591 KINKLEGARDKAMFF--NNAGSSTLDAAEIFDKLRVAPYTYFKNIKEAESMGASLALAMT 648

Query: 453 SPESPKI 473
               P++
Sbjct: 649 KSLYPRV 655


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,226,506
Number of Sequences: 37544
Number of extensions: 217255
Number of successful extensions: 484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)