Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f07
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.60 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.7  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 204 VIADSLNGKHRICSSGVQQNKITQPKKVNVMEDKSNFLLPNNQRFVE 344
           +I +  NG   +    VQ       KK NV+++  NF   N +  V+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEKNTRDIVQ 89


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 451 PVLSHQRYSPCCIE 492
           P   H++Y PCC E
Sbjct: 207 PAERHKKYYPCCDE 220


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 402 NEHIISH*LLDYQKPANYPTPRI 334
           N++II+H +L+Y    +   PRI
Sbjct: 786 NQNIITHMILNYVGSEDSVIPRI 808


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +1

Query: 451 PVLSHQRYSPCCIE 492
           P   ++ Y PCC E
Sbjct: 221 PASRNEEYYPCCTE 234


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 381 NEKLYAHYLSQAAWNGGLIVLVQ 449
           N KL   +L  + W  GL+V  +
Sbjct: 29  NAKLAFGFLDNSVWADGLLVFYE 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,541
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)