Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f06
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    27   1.6  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    26   4.9  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   4.9  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   6.4  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   8.5  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 198 HLLXKDMQAPCLRTRV*LKKLFRSYQQHTRRPS 100
           H+L K     C+ TR  LK+ +  + +HT + S
Sbjct: 3   HILNKGSSKSCIYTRPCLKRFYHQHYEHTGKLS 35


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 117 VVDKNEKVFLVKHVFSNTVPA 179
           V D +++VF+V H+F +++PA
Sbjct: 101 VTDASKEVFVVVHMFQDSLPA 121


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 375 NSKHVFDHFGCSSNYCFNNYV 437
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 72  YRQSSPPVRLTGDVYVVDKNEKVFLVKHVFS 164
           Y     P R TG+V  +D+N K  +V  +++
Sbjct: 401 YNMGGIPTRFTGEVLTIDENGKDKIVPGLYA 431


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 243 DLNREGISTQTNFRNHL-LXKDMQAPCLRTRV*LKKLFRSYQQHTRRPSNGPAANSAGTR 67
           D++++ I   ++   H  L K M +   R++  L K+   Y+ HT         +S  TR
Sbjct: 148 DIDQKPIPWSSSPIEHTKLTKSMLSSEKRSKNHLSKI---YEDHTSEKGASSVISSNITR 204

Query: 66  AGWDESR*FPW 34
            G   SR  PW
Sbjct: 205 QGIKRSRTLPW 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,927
Number of Sequences: 5004
Number of extensions: 36942
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)