Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f06
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0298 + 2318836-2319051,2321238-2323106                           29   2.8  
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499     28   6.5  
04_04_0463 - 25397837-25399693,25402136-25402405                       28   6.5  
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338...    28   6.5  
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    27   8.7  
03_06_0629 + 35187318-35187320,35187424-35187534,35188089-351881...    27   8.7  
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653...    27   8.7  

>03_01_0298 + 2318836-2319051,2321238-2323106
          Length = 694

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 372 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 470
           A   H F HF C SSN    NYVC + +  WK+L
Sbjct: 92  AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124


>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
          Length = 524

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 141 KLFRSYQQHTRRPSNGPAANSAGTRAGW 58
           +L    +Q+   P  GPA NS+G  AGW
Sbjct: 334 RLSEEDKQNMPLPVQGPACNSSGHLAGW 361


>04_04_0463 - 25397837-25399693,25402136-25402405
          Length = 708

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 372 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 470
           A   H+F HF C SSN    NY C I +  WK++
Sbjct: 111 AECSHMF-HFHCISSNVKHGNYFCPICRAKWKEI 143


>04_03_0128 -
           11530618-11530838,11532683-11532809,11533746-11533892,
           11533981-11534082,11534207-11534332,11535507-11535584,
           11535780-11535827,11536005-11536193
          Length = 345

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 241 FKSRRDFNSDELS*SPLX-KRYAGTVFENTCLTKKTFSFLSTTYTSPVKR 95
           +KS    +SD+LS S    K+  G + + TC TKK+ SF   T   PV R
Sbjct: 271 YKSEDGDSSDDLSDSSSEVKKNKGKLEKTTCKTKKSVSF--NTAKRPVGR 318


>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 339 HRCAVRKLFKQANSKH-VFDHFGCSSNYCFN 428
           H C +RKL K   S+H +   +  S  +CFN
Sbjct: 637 HPCRLRKLLKSVASRHGLISGWKFSGKHCFN 667


>03_06_0629 +
           35187318-35187320,35187424-35187534,35188089-35188191,
           35188357-35188416,35188502-35188661,35188755-35188872
          Length = 184

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 372 ANSKHVFDHFGCSSNYCF 425
           AN   VFD   C+S YCF
Sbjct: 105 ANLNRVFDQTACTSKYCF 122


>02_04_0640 -
           24664841-24664855,24664895-24664978,24665232-24665319,
           24665457-24667318
          Length = 682

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 372 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 470
           A   H+F HF C SS+    NYVC + +  WK++
Sbjct: 12  AECSHMF-HFHCISSSVKHGNYVCPVCRAKWKEI 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,119,085
Number of Sequences: 37544
Number of extensions: 217031
Number of successful extensions: 489
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)