Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f06
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    30   1.1  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       30   1.1  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       30   1.1  
AL132943-12|CAB81978.3|  514|Caenorhabditis elegans Hypothetical...    28   4.5  
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    28   4.5  

>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 324 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 446
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 324 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 446
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 324 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 446
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>AL132943-12|CAB81978.3|  514|Caenorhabditis elegans Hypothetical
           protein Y116F11B.9a protein.
          Length = 514

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 238 KSRRDFNSDE-LS*SPLXKRYAGTVFENTCLTKKTFSFLSTTYTSPVKRTGGELCRYTSR 62
           K ++ F  D+ L   P    Y  +V   +CLTKK F+++        +  G ++C++  R
Sbjct: 417 KMQKSFEIDQILPDLPSKLYYFNSV--RSCLTKKYFNYVKLEKYGKTQCPGPQMCKFQKR 474

Query: 61  LG 56
            G
Sbjct: 475 WG 476


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 345 CAVRKLFKQANSKHVFDHFGCSSNYCFNN 431
           C  R+ F +   K  F++F CSS    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,630,019
Number of Sequences: 27780
Number of extensions: 208602
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)