Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f05
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158...    27   7.3  
07_03_1702 + 28828635-28828905,28831222-28831448,28831601-288322...    27   9.7  
01_05_0677 - 24202037-24202444,24202499-24202795,24202960-242030...    27   9.7  

>09_01_0102 +
           1582793-1582898,1582988-1583093,1584115-1584172,
           1584676-1584745,1585132-1585197,1586374-1586429,
           1587992-1588078,1588819-1589139,1589827-1589946,
           1590747-1590881,1591529-1591605,1591681-1591756,
           1592800-1592874,1592971-1593075,1593299-1593374,
           1594482-1594617,1594702-1594804,1595186-1595298,
           1596907-1597111,1597173-1597301,1597403-1597517,
           1597710-1597795,1599108-1599203,1599615-1599751,
           1600374-1600476,1601809-1601888,1602013-1602091,
           1602241-1602298,1602489-1602586,1602673-1602767,
           1602861-1602918
          Length = 1074

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 205 LKLLRRKTNIKEVAVMLNKKTTECLQLKQKIDKKIAQRILIKI 333
           +KL    T+ +  A  L +K+ E   +K+K++  IAQ + +KI
Sbjct: 294 VKLKEELTDKERNARSLVEKSREVTMMKEKLEDDIAQAVALKI 336


>07_03_1702 +
           28828635-28828905,28831222-28831448,28831601-28832233,
           28832311-28832760
          Length = 526

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 391 DIIF*TCFTSRIVRVKQV*DMMSSSQIIVCNK 486
           D+I  TCF S  V+ KQ+ DM+   Q  V  K
Sbjct: 209 DVISRTCFGSSYVKGKQIFDMIRELQKTVSTK 240


>01_05_0677 -
           24202037-24202444,24202499-24202795,24202960-24203009,
           24204534-24204589,24205751-24206040,24206100-24206488,
           24210578-24210818
          Length = 576

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 172 AKTCLDIALDNLKLLRRKTNIKEVAVMLNKKTTECLQLKQKIDKKIAQR 318
           +++C+ I   ++ L+     +KE    LNK    C + K  +DK ++++
Sbjct: 4   SRSCVSIC--DVSLVVENNELKEQVAKLNKSLERCFKDKNTLDKILSEQ 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,349,521
Number of Sequences: 37544
Number of extensions: 210653
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)