Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f03
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   1.2  
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    25   4.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    24   6.3  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   6.3  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    24   6.3  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    24   8.3  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    24   8.3  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 224 TSTPAG-FTNVLNAPSVRNLGNNRYQPGYQLSNN--RFVSTSDINRITRNNDVPNIRNVF 54
           T TP    +N LN+  V N    +  P    S+N  RF  TS+ + I  + + P   +V+
Sbjct: 224 TYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESIIFTSPNTPEHPSVY 283

Query: 53  QGISDPQI 30
           Q    P+I
Sbjct: 284 QTDITPEI 291


>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 134 SNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQI 30
           SN+R V T+D N +    D+ N++     +S  Q+
Sbjct: 200 SNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQL 234


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 364 FFFXKTFTVIYLLNKFALK*VFLQIFVESINCIL 263
           FFF    TV     K   +  FL+IF E  NC+L
Sbjct: 796 FFFCFLHTV-EPSGKLTFELAFLEIFYELFNCLL 828


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 134  IIDSPADICCFQG---CVHWAR*AHL*NRRECLLKDAYYQQEN 253
            ++D P  +C       C  W R     N R  LL DA+Y+Q N
Sbjct: 894  LLDHPLRVCVLLAQIDCNLWIR-----NGRSILLTDAFYRQLN 931


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 281 VNKLYPNQASFLADNTRLLTSTPAGF 204
           +N L PNQASF+  N+ L      GF
Sbjct: 695 LNHLSPNQASFVIRNSSLSEYGVLGF 720


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 157 LLFPRLRTLGALSTFVKPAGVLVKR 231
           L+FP L +LGA  ++ KP+  ++ +
Sbjct: 290 LIFPALSSLGAWISWCKPSSAVLSQ 314


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -3

Query: 275 KLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSN 129
           KLY  +A F    T L  +     T     PS+R + N   +P +  SN
Sbjct: 742 KLYRERAKFDIFRTELSKNHTGEITRKATEPSIRIICNFCRKPIFPFSN 790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,695
Number of Sequences: 5004
Number of extensions: 27107
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)