Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f03
         (364 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U72618-1|AAC51137.1|  631|Homo sapiens hepatic nuclear factor 1-...    32   0.48 
M57732-1|AAA88077.1|  631|Homo sapiens hepatic nuclear factor 1 ...    32   0.48 
EF641294-1|ABR09270.1|  631|Homo sapiens transcription factor 1,...    32   0.48 
BC104910-1|AAI04911.1|  631|Homo sapiens transcription factor 1,...    32   0.48 
BC104908-1|AAI04909.1|  631|Homo sapiens transcription factor 1,...    32   0.48 
BC033308-1|AAH33308.1|  767|Homo sapiens DAZ interacting protein...    29   4.5  
AK057406-1|BAB71474.1|  539|Homo sapiens protein ( Homo sapiens ...    29   4.5  
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    29   5.9  
U18270-1|AAB60433.1|  694|Homo sapiens thymopoietin alpha protein.     28   7.8  
U09086-1|AAB60329.1|  694|Homo sapiens thymopoietin alpha protein.     28   7.8  
S76736-1|AAB33958.1|  526|Homo sapiens TRPP protein.                   28   7.8  
AJ430032-1|CAD22550.1| 1156|Homo sapiens mucin 4 protein.              28   7.8  
AJ400858-1|CAC14143.1| 2167|Homo sapiens MUC4 protein splice var...    28   7.8  
AJ277412-1|CAC10061.1| 2117|Homo sapiens mucin 4, variant V3 pro...    28   7.8  
AJ276359-1|CAB81773.1| 2169|Homo sapiens mucin 4 protein.              28   7.8  
AJ242550-1|CAB85606.1| 1125|Homo sapiens MUC4/X apomucin protein.      28   7.8  
AJ242549-1|CAB85605.1| 1176|Homo sapiens MUC4/Y apomucin protein.      28   7.8  
AJ242548-1|CAB85604.1|  930|Homo sapiens sv8-MUC4 apomucin protein.    28   7.8  
AJ010901-1|CAB38059.1| 1156|Homo sapiens MUC4 protein.                 28   7.8  
AF522055-1|AAM66747.1| 2169|Homo sapiens MUC4 protein.                 28   7.8  

>U72618-1|AAC51137.1|  631|Homo sapiens hepatic nuclear factor
           1-alpha protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 296 TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 126
           TNL  +  L P +  F +D      S   TPA     L+ PS    G    QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587

Query: 125 RFVSTSDI 102
             VS+S +
Sbjct: 588 PTVSSSSL 595


>M57732-1|AAA88077.1|  631|Homo sapiens hepatic nuclear factor 1
           protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 296 TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 126
           TNL  +  L P +  F +D      S   TPA     L+ PS    G    QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587

Query: 125 RFVSTSDI 102
             VS+S +
Sbjct: 588 PTVSSSSL 595


>EF641294-1|ABR09270.1|  631|Homo sapiens transcription factor 1,
           hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin
           protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 296 TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 126
           TNL  +  L P +  F +D      S   TPA     L+ PS    G    QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587

Query: 125 RFVSTSDI 102
             VS+S +
Sbjct: 588 PTVSSSSL 595


>BC104910-1|AAI04911.1|  631|Homo sapiens transcription factor 1,
           hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin
           protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 296 TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 126
           TNL  +  L P +  F +D      S   TPA     L+ PS    G    QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587

Query: 125 RFVSTSDI 102
             VS+S +
Sbjct: 588 PTVSSSSL 595


>BC104908-1|AAI04909.1|  631|Homo sapiens transcription factor 1,
           hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin
           protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 296 TNLRRVNKLYPNQASFLADNTRLLTS---TPAGFTNVLNAPSVRNLGNNRYQPGYQLSNN 126
           TNL  +  L P +  F +D      S   TPA     L+ PS    G    QP ++LS +
Sbjct: 528 TNLSALASLTPTKQVFTSDTEASSESGLHTPASQATTLHVPSQDPAGIQHLQPAHRLSAS 587

Query: 125 RFVSTSDI 102
             VS+S +
Sbjct: 588 PTVSSSSL 595


>BC033308-1|AAH33308.1|  767|Homo sapiens DAZ interacting protein
           1-like protein.
          Length = 767

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 158 RYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGIS 42
           ++QP +   + R +ST D++R+ R  DV  ++    GI+
Sbjct: 25  KFQPRHDSMDWRRISTLDVDRVARELDVATLQENIAGIT 63


>AK057406-1|BAB71474.1|  539|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32844 fis, clone TESTI2003354, weakly similar to
           TRICHOHYALIN. ).
          Length = 539

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 158 RYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGIS 42
           ++QP +   + R +ST D++R+ R  DV  ++    GI+
Sbjct: 25  KFQPRHDSMDWRRISTLDVDRVARELDVATLQENIAGIT 63


>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
            marker CA125 protein.
          Length = 22152

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 296  TNLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNA 186
            TN+   +  Y +Q+S LAD++ + T++  G T+VL +
Sbjct: 7777 TNVATTSSGYKSQSSVLADSSPMCTTSTMGDTSVLTS 7813


>U18270-1|AAB60433.1|  694|Homo sapiens thymopoietin alpha protein.
          Length = 694

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
 Frame = -3

Query: 275 KLYPNQASFLADN-TRLLTSTPAGFTNVLNAPSVRNLGNN---RY---QPGYQLSNNRFV 117
           KLY  +   L +  T   +STP   T   +A + R  G+N   RY   + G +  + +  
Sbjct: 140 KLYEKKLLKLREQGTESRSSTPLP-TISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVK 198

Query: 116 STSDINRITRNNDVPNIRNVFQGISDPQINS 24
           ST DI   +     P+    FQGIS P+I++
Sbjct: 199 STRDIVPFSELGTTPSGGGFFQGISFPEIST 229


>U09086-1|AAB60329.1|  694|Homo sapiens thymopoietin alpha protein.
          Length = 694

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
 Frame = -3

Query: 275 KLYPNQASFLADN-TRLLTSTPAGFTNVLNAPSVRNLGNN---RY---QPGYQLSNNRFV 117
           KLY  +   L +  T   +STP   T   +A + R  G+N   RY   + G +  + +  
Sbjct: 140 KLYEKKLLKLREQGTESRSSTPLP-TISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVK 198

Query: 116 STSDINRITRNNDVPNIRNVFQGISDPQINS 24
           ST DI   +     P+    FQGIS P+I++
Sbjct: 199 STRDIVPFSELGTTPSGGGFFQGISFPEIST 229


>S76736-1|AAB33958.1|  526|Homo sapiens TRPP protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
 Frame = -3

Query: 275 KLYPNQASFLADN-TRLLTSTPAGFTNVLNAPSVRNLGNN---RY---QPGYQLSNNRFV 117
           KLY  +   L +  T   +STP   T   +A + R  G+N   RY   + G +  + +  
Sbjct: 140 KLYEKKLLKLREQGTESRSSTPLP-TISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVK 198

Query: 116 STSDINRITRNNDVPNIRNVFQGISDPQINS 24
           ST DI   +     P+    FQGIS P+I++
Sbjct: 199 STRDIVPFSELGTTPSGGGFFQGISFPEIST 229


>AJ430032-1|CAD22550.1| 1156|Homo sapiens mucin 4 protein.
          Length = 1156

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   CAAIGAMSLFEGLKCPEIHCVCWGHRCY 88
           CAA+G+  L +   CP  +C   GH CY
Sbjct: 852 CAALGSSFLCQNQSCPVNYCYNQGH-CY 878


>AJ400858-1|CAC14143.1| 2167|Homo sapiens MUC4 protein splice variant
            sv21 protein.
          Length = 2167

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5    CAAIGAMSLFEGLKCPEIHCVCWGHRCY 88
            CAA+G+  L +   CP  +C   GH CY
Sbjct: 1865 CAALGSSFLCQNQSCPVNYCYNQGH-CY 1891


>AJ277412-1|CAC10061.1| 2117|Homo sapiens mucin 4, variant V3 protein.
          Length = 2117

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5    CAAIGAMSLFEGLKCPEIHCVCWGHRCY 88
            CAA+G+  L +   CP  +C   GH CY
Sbjct: 1813 CAALGSSFLCQNQSCPVNYCYNQGH-CY 1839


>AJ276359-1|CAB81773.1| 2169|Homo sapiens mucin 4 protein.
          Length = 2169

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5    CAAIGAMSLFEGLKCPEIHCVCWGHRCY 88
            CAA+G+  L +   CP  +C   GH CY
Sbjct: 1865 CAALGSSFLCQNQSCPVNYCYNQGH-CY 1891


>AJ242550-1|CAB85606.1| 1125|Homo sapiens MUC4/X apomucin protein.
          Length = 1125

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   CAAIGAMSLFEGLKCPEIHCVCWGHRCY 88
           CAA+G+  L +   CP  +C   GH CY
Sbjct: 821 CAALGSSFLCQNQSCPVNYCYNQGH-CY 847


>AJ242549-1|CAB85605.1| 1176|Homo sapiens MUC4/Y apomucin protein.
          Length = 1176

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   CAAIGAMSLFEGLKCPEIHCVCWGHRCY 88
           CAA+G+  L +   CP  +C   GH CY
Sbjct: 872 CAALGSSFLCQNQSCPVNYCYNQGH-CY 898


>AJ242548-1|CAB85604.1|  930|Homo sapiens sv8-MUC4 apomucin protein.
          Length = 930

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   CAAIGAMSLFEGLKCPEIHCVCWGHRCY 88
           CAA+G+  L +   CP  +C   GH CY
Sbjct: 626 CAALGSSFLCQNQSCPVNYCYNQGH-CY 652


>AJ010901-1|CAB38059.1| 1156|Homo sapiens MUC4 protein.
          Length = 1156

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   CAAIGAMSLFEGLKCPEIHCVCWGHRCY 88
           CAA+G+  L +   CP  +C   GH CY
Sbjct: 852 CAALGSSFLCQNQSCPVNYCYNQGH-CY 878


>AF522055-1|AAM66747.1| 2169|Homo sapiens MUC4 protein.
          Length = 2169

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 5    CAAIGAMSLFEGLKCPEIHCVCWGHRCY 88
            CAA+G+  L +   CP  +C   GH CY
Sbjct: 1865 CAALGSSFLCQNQSCPVNYCYNQGH-CY 1891


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,684,164
Number of Sequences: 237096
Number of extensions: 930579
Number of successful extensions: 1565
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2248517154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)