Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18f03
(364 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical pr... 30 0.43
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical pr... 29 1.3
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 29 1.3
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 29 1.3
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 29 1.3
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 2.3
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 28 2.3
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 27 4.0
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 27 4.0
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 27 5.3
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 27 5.3
AF099917-2|AAC68785.1| 235|Caenorhabditis elegans Hypothetical ... 27 5.3
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 26 7.0
AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever sho... 26 7.0
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 26 7.0
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 26 7.0
AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical... 26 9.3
>Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical
protein F58H1.5 protein.
Length = 323
Score = 30.3 bits (65), Expect = 0.43
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 170 LGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNI 66
+ + +++P Q S+N+FVS SDI I + D +
Sbjct: 28 ISDEKFEPAEQCSSNQFVSISDIGTIYDSEDTQQL 62
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 176 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 57
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical
protein F36H2.2 protein.
Length = 441
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 280 SINCILIRPVFLLIIRVF*QALPPVSQMCSTRP 182
S N + + P +LLII AL P+ MC+ RP
Sbjct: 335 SANSLRLSPKYLLIISFLRFALIPMIAMCNVRP 367
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 200 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRN 60
NV NAP+V+N N + Q N + + N R ND PN++N
Sbjct: 611 NVQNAPNVQNASNVQNSQNGQNDKNDPNAQNSQNGQNRQND-PNVQN 656
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 176 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 57
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 176 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 57
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
protein F26A3.3 protein.
Length = 1632
Score = 27.9 bits (59), Expect = 2.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 2 PCAAIGAMSLFEGLKCPEIHCVC 70
PC G + +FE + PE+H +C
Sbjct: 931 PCIVAGDVRIFEAVDIPELHHMC 953
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 27.9 bits (59), Expect = 2.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 2 PCAAIGAMSLFEGLKCPEIHCVC 70
PC G + +FE + PE+H +C
Sbjct: 931 PCIVAGDVRIFEAVDIPELHHMC 953
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
protein W10C6.1 protein.
Length = 1461
Score = 27.1 bits (57), Expect = 4.0
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 296 TNLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFV 117
T+L ++ + AS L D TR++ TP F+ + R+ G+ P L ++ V
Sbjct: 28 THLTQMCRRGDTNASLLRDFTRMIRDTPRNFSKNTQHGNDRDFGDLERDPDVDLLLSK-V 86
Query: 116 STSDINRITRNNDVPNIRNVF--QGISDPQIN 27
+ + +P +F +SD IN
Sbjct: 87 CLECVYVEPKEGAIPKANKIFISNFLSDMYIN 118
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
protein F26A3.8 protein.
Length = 1601
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 2 PCAAIGAMSLFEGLKCPEIHCVC 70
PC G + +FE + PE+H +C
Sbjct: 904 PCIVPGDVRIFEAVDIPELHHMC 926
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 2 PCAAIGAMSLFEGLKCPEIHCVC 70
PC G + +FE + PE+H +C
Sbjct: 904 PCIVPGDVRIFEAVDIPELHHMC 926
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 200 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPN 69
+ LN ++R+ N RY Y+L N + ++ N D+ N
Sbjct: 221 HTLNMLTIRSSTNERYNMEYELEENSDPIEDEKEKVVTNRDMIN 264
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 200 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPN 69
+ LN ++R+ N RY Y+L N + ++ N D+ N
Sbjct: 221 HTLNMLTIRSSTNERYNMEYELEENSDPIEDEKEKVVTNRDMIN 264
>AF099917-2|AAC68785.1| 235|Caenorhabditis elegans Hypothetical
protein F54D10.5 protein.
Length = 235
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 164 NNRYQPGYQLSNNRFVSTSDINRITRNNDVPNI 66
NN+ QPG N D+ I RNN + N+
Sbjct: 2 NNQDQPGSSHQNEDSSPDDDVEEILRNNPMLNV 34
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 26.2 bits (55), Expect = 7.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -3
Query: 188 APSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQL 12
+PS+ ++ + L+NN STSD+ +N VP I + + P+I LR L
Sbjct: 9 SPSITTASSSTFSIS-NLTNNNATSTSDLPASAISNIVPQIPPTPRRV-PPKIGLLRHL 65
>AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform b protein.
Length = 461
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 200 NVLNAPSVRNLGNNRYQPGYQ 138
NV+NA + R G NR++ GY+
Sbjct: 89 NVINAMNERGGGRNRFEKGYR 109
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 200 NVLNAPSVRNLGNNRYQPGYQ 138
NV+NA + R G NR++ GY+
Sbjct: 89 NVINAMNERGGGRNRFEKGYR 109
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 200 NVLNAPSVRNLGNNRYQPGYQ 138
NV+NA + R G NR++ GY+
Sbjct: 89 NVINAMNERGGGRNRFEKGYR 109
>AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical
protein Y73B3A.7 protein.
Length = 205
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 149 PGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRR 6
P L NR V + + + NND N +N Q I PQ+ ++ +R+
Sbjct: 3 PKNLLKKNRIVIEASLV-LHNNNDNNNNKNRMQMIMAPQLRRIQMVRK 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,871,901
Number of Sequences: 27780
Number of extensions: 160943
Number of successful extensions: 423
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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