Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f02
         (616 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55C02 Cluster: Putative uncharacterized protein; n=1; ...    36   1.0  
UniRef50_A7RKU3 Cluster: Predicted protein; n=4; Nematostella ve...    34   3.1  
UniRef50_Q7PDQ5 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=...    33   5.4  

>UniRef50_Q55C02 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 704

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
 Frame = +2

Query: 140 SCACHNSNREVSNTKGLERI*LFN*YFIKKKTMCDLEILKLESRTITSSGMVESYLKQHS 319
           +C   N  +E++  K  + +      FIK    C LEI+K   R +     +     Q S
Sbjct: 82  NCLIKNKIKEINQIKENQNL------FIKPLITC-LEIIKNNKRLLIKKENINLIFNQQS 134

Query: 320 EFRSINVWKTWSSDNEDHHVVCYGKKIHYHKF-MTLNN-ESITQYKHLETMD 469
               +N  + W SD+  + ++ Y     YH+F MT  + + I +YK  + +D
Sbjct: 135 GELFLN--QIWRSDSIKNEIINYLSIFKYHRFKMTFTSIKQIQKYKFKDYLD 184


>UniRef50_A7RKU3 Cluster: Predicted protein; n=4; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 2702

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = +2

Query: 221  IKKKTMCDLEILKLESRTITSSGMVESYLKQHSEFRSINVWKTWSSDNEDHHVVCYGKKI 400
            +  K    L+ L+L  +   S G V+    Q   FRSIN+    +   +D  +    K++
Sbjct: 2343 LASKKQLILDSLQLLGKQRPSEGEVDRNTAQLKHFRSINITHLHNDSEKDSLLTSSKKQL 2402

Query: 401  HYHKFMTLNNESITQYKHLETMDE 472
                   LN  SI   K L+T++E
Sbjct: 2403 IKDSLNVLNRRSIGGKKVLDTVEE 2426


>UniRef50_Q7PDQ5 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=1;
           Plasmodium yoelii yoelii|Rep: ERYTHROCYTE MEMBRANE
           PROTEIN PFEMP3 - Plasmodium yoelii yoelii
          Length = 1137

 Score = 33.1 bits (72), Expect = 5.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 329 SINVWKTWSSDNEDHHVVCYGKKIHYHKFMTLNNESITQYKHLETMDER 475
           +INV K   +++ D   VCY    + +KF T  N+ I+Q     T D++
Sbjct: 197 NINVNKQKKNESNDDSSVCYNNIYNINKFTTDENDDISQKSDSNTYDKK 245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,655,099
Number of Sequences: 1657284
Number of extensions: 9520455
Number of successful extensions: 19571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19569
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)