Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f02
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    28   0.93 
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    26   5.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   8.7  

>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
 Frame = +2

Query: 119 IFTSQTISCACHNS-NREVSNTKGLERI*LFN*YFIKKKTMCDLEILKLESRTITSSGMV 295
           I TS +IS +  +S N E ++        + + + +     C L++     RT     M 
Sbjct: 290 ITTSNSISLSLVSSFNTEATSNLYTRFFKIASSFRVSYLMGCLLDLFVPSIRTGALKAMK 349

Query: 296 ESYLKQHSEFRSINVWKTWSSDNEDHHVVC---YGKKIHY 406
           + YL  HS     ++ K  ++ +ED  V C   +G KI Y
Sbjct: 350 KCYLSAHSNIPFKDLMKILAATSEDELVQCCKMHGLKIEY 389


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 120 YLHHKLYLVRVITPIEKSRTPKVSSGFDS 206
           Y+H  +Y   V    EK +T KV  GFDS
Sbjct: 305 YVHKNVYDEFVSKLTEKVKTIKVGDGFDS 333


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 366 SLSEDQVFQTLIERNSECCFKYD 298
           +L E+++   L  + S CCF +D
Sbjct: 438 NLQEEKISDVLFSKISSCCFAHD 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,927
Number of Sequences: 5004
Number of extensions: 45108
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)