Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18f02
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381...    31   0.73 
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     29   2.9  
03_06_0616 - 35121755-35121913,35121994-35122109,35122198-351223...    29   2.9  
06_03_1327 - 29356665-29357869,29358002-29358058,29358388-29358523     28   6.8  
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    27   8.9  

>03_05_0124 +
           21034963-21035181,21035618-21037466,21037485-21038194,
           21038426-21038470,21038557-21038745
          Length = 1003

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/70 (24%), Positives = 36/70 (51%)
 Frame = +2

Query: 260 LESRTITSSGMVESYLKQHSEFRSINVWKTWSSDNEDHHVVCYGKKIHYHKFMTLNNESI 439
           L+ RT+  SG +  +   +S   +   + ++  +N      C+ K   +H  +T++NE  
Sbjct: 509 LDLRTLPVSGGIRIFQVVNSMDDNRRYFSSFFKNNRR----CFSKLFSHHINLTIDNELW 564

Query: 440 TQYKHLETMD 469
           + ++HL T+D
Sbjct: 565 SSFRHLRTLD 574


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 253 NFQITHRFFFNKILIKESNPLETFGVRDFSIGVMTRTRYSL*CK 122
           NF + HR FF K    +S P    G R    G +++  +S+ CK
Sbjct: 112 NFALFHRIFFLKPQPNKSKPCVVGGARFQLRGTLSQKYFSMPCK 155


>03_06_0616 -
           35121755-35121913,35121994-35122109,35122198-35122342,
           35122475-35122646,35123225-35123289
          Length = 218

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 335 NVWKTWSSDNEDHHVVCYGKKIHYHKFMTLNNESITQYKHLET 463
           N    W +D  ++HVV    K++YH +M  N ++  ++   ET
Sbjct: 34  NEQDNWDNDRTENHVVENTTKLNYHSYM--NRQTRAKWSKSET 74


>06_03_1327 - 29356665-29357869,29358002-29358058,29358388-29358523
          Length = 465

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 430 IIKCHKFMVVYFFTIAHNMMIFIVGGPGFPNI 335
           +I   +F+V+Y  T+   M++   G PGFP++
Sbjct: 22  LIVAIQFLVIYSPTLDQYMVMLTTGKPGFPSM 53


>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 224 KKKTMCDLEILKLESRTITSSGMVESY--LKQHSEFRSINVWKTWSSDNEDHHV 379
           K++T C+LEI    S+ I  +   ESY  L+QH       V   WS+  +   V
Sbjct: 514 KEQTHCNLEIFSPNSKKIIDASHYESYASLQQH-PLGQCQVPNYWSAAGQSSFV 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,424
Number of Sequences: 37544
Number of extensions: 238287
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)