Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e24
         (171 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733...    29   0.70 
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870...    28   0.93 
04_04_0059 + 22418795-22418908,22419064-22419202,22419437-224195...    26   3.8  

>04_03_0927 +
           20871487-20871903,20872667-20872812,20873204-20873301,
           20873378-20873572,20873670-20873797,20873892-20874050,
           20875119-20875223,20875449-20875559,20875653-20875790,
           20875909-20876091,20876362-20876517,20876615-20876738,
           20876820-20877030,20877614-20877729,20877828-20878053,
           20878218-20878311,20879198-20879275,20879822-20879971,
           20880086-20880292,20880584-20880788,20880990-20881096
          Length = 1117

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 123 KHHIIQQHXTKVHGLEQLHFVNYFMGFCGFERR 25
           K + I QH  ++H   +L F+N F+ F G+  R
Sbjct: 735 KSYDISQHLHEIHESVRLAFLNSFLDFAGYLER 767


>08_02_1563 +
           27886202-27886446,27886533-27886618,27886942-27887030,
           27887193-27887432,27887527-27887648,27888103-27888178,
           27888276-27888383,27888465-27888641,27888959-27889176,
           27889313-27889445,27889584-27889807,27890052-27890205,
           27890297-27890380
          Length = 651

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 145 LYPXDCPKTPHNSTARY*STWLGTASFRKLLHGLL 41
           LYP +CPKT  N T    + +     F +++ G +
Sbjct: 511 LYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFM 545


>04_04_0059 +
           22418795-22418908,22419064-22419202,22419437-22419525,
           22420428-22420690,22420793-22420883,22420966-22421325
          Length = 351

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 151 QNLYPXDCPKTP 116
           +N YP DCPK+P
Sbjct: 207 ENTYPIDCPKSP 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,284,609
Number of Sequences: 37544
Number of extensions: 56613
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 268835280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)