Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e24
         (171 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   3.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   9.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    18   9.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    18   9.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    18   9.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          18   9.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 85  WLGTASFRKLLHGLL 41
           W+ T SF+K + G L
Sbjct: 375 WIFTISFQKYMSGTL 389


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 169 LNC*QKQNLYPXDCP 125
           L+C  + N++P D P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 169 LNC*QKQNLYPXDCP 125
           L+C  + N++P D P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 169 LNC*QKQNLYPXDCP 125
           L+C  + N++P D P
Sbjct: 235 LSCQGRLNIFPFDDP 249


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 169 LNC*QKQNLYPXDCP 125
           L+C  + N++P D P
Sbjct: 184 LSCQGRLNIFPFDDP 198


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 13  PTLWTAFKTTEAHEVV 60
           PT W+    TEA E V
Sbjct: 569 PTPWSEDAMTEALEAV 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,683
Number of Sequences: 438
Number of extensions: 697
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)