Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e20
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989...    65   4e-11
09_02_0076 - 3959572-3960279                                           30   1.6  
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487...    29   2.8  
08_02_0073 + 11919938-11920060,11922325-11922939                       29   3.7  
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582...    29   3.7  
01_01_0996 - 7879154-7880117,7881280-7881395                           29   3.7  
06_03_0319 + 19537529-19538056                                         28   6.5  
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579     27   8.6  

>05_07_0341 -
           29398221-29398345,29398757-29398811,29398904-29398981,
           29399063-29399154,29399237-29399260,29399353-29399471,
           29399839-29399908,29399985-29400051,29400145-29400219,
           29400313-29400351,29400735-29400827,29401611-29401634
          Length = 286

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 38/107 (35%), Positives = 55/107 (51%)
 Frame = +3

Query: 198 EFRAGRMTLKGRMVHPDKRKGLLYVYQGEDSLMHFCWKDRTTGEVEDDLLIFPDDCEFTR 377
           EFRAG+M+L G  V PD RKGL+ +  G D +                  +FP++  F +
Sbjct: 13  EFRAGKMSLDGTRVIPDTRKGLVRI--GRDQI------------------VFPEEAVFEK 52

Query: 378 VNECTTGRVYVXXXXXXXXXXXXWMQEPKADKDEEYCRRINEALNNP 518
           V + ++GRVY+            WMQEP AD D + CR++N  +N P
Sbjct: 53  VTQ-SSGRVYILKFRHDSRKFFFWMQEPSADDDSQICRQVNAYINRP 98


>09_02_0076 - 3959572-3960279
          Length = 235

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/44 (38%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
 Frame = -1

Query: 443 EALLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLPRSS 315
           EA+L++  + +++NS    F+ TRK T+++KYK +V+++ PR+S
Sbjct: 49  EAMLQQARD-QFLNS----FMQTRKGTLVQKYKIKVVVDDPRTS 87


>04_04_0090 -
           22747049-22747282,22747438-22747847,22748562-22748757,
           22749511-22749583,22749673-22749753,22749855-22749940,
           22750050-22750126,22750313-22750409,22751025-22752020,
           22752882-22752926
          Length = 764

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 140 TVWQYVWSWGKFRRKQTHSRISCWSYDVERSYGTSRQK 253
           TVW   W W +F  ++   R   W   ++ SY  +R++
Sbjct: 666 TVWARHWYWKRFAPQEQLKRSERWKDSIDFSYVRARRR 703


>08_02_0073 + 11919938-11920060,11922325-11922939
          Length = 245

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -1

Query: 476 ILVSLWLLHPEEALLRKQLELEYINSACGAFIHTRKFTIIRKYKQVIL 333
           +L++L  L PE+    + +  +  N    +F  TRK T+++KYK  ++
Sbjct: 74  VLITLDKLTPEQQKDLEAMMQQARNQFLSSFTETRKGTLVQKYKVKVI 121


>04_03_0052 +
           10257109-10257337,10257580-10257668,10257708-10258289,
           10258477-10258668,10259392-10259563,10260190-10260461,
           10260682-10260801,10260912-10260968,10261631-10261831,
           10262451-10262511,10262712-10263013
          Length = 758

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
 Frame = -1

Query: 437 LLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLP 324
           L+R+Q + + +NS    F+ TRK T+++KYK +++ ++P
Sbjct: 671 LMRQQTQHQLLNS----FMETRKGTVVQKYKVKLVADVP 705


>01_01_0996 - 7879154-7880117,7881280-7881395
          Length = 359

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 248 VWMYHTTFQRHTTSTKFYYVFVSS*TSPKTRRIAKQC 138
           +W +H T  R+ ++  +  +  SS T P  RRIA  C
Sbjct: 15  LWEFHATGPRNISNPSWRDLIRSSWTDPNYRRIAVSC 51


>06_03_0319 + 19537529-19538056
          Length = 175

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = -1

Query: 434 LRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLPRSS 315
           + +Q   +++NS    F+ TRK T+++KYK +V+ + PR+S
Sbjct: 53  MMQQARDQFLNS----FMQTRKGTLVQKYKVKVVADDPRTS 89


>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
          Length = 824

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = -1

Query: 305 TKVHERIFSLVNIQEPLPFVWMYH----TTFQRH 216
           T   ER+F L+N  E L FV  YH     TF RH
Sbjct: 154 THFAERVFELLNPDEDLVFVHDYHLWAFPTFLRH 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,478
Number of Sequences: 37544
Number of extensions: 289008
Number of successful extensions: 648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)