Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e20
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical pr...   108   3e-24
U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical
           protein C56G2.7 protein.
          Length = 374

 Score =  108 bits (260), Expect = 3e-24
 Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
 Frame = +3

Query: 138 ALFGNTXXXXXXXXXNKHIVEFRAGRMTLKG------RMVHPDKRKGLLYVYQGEDSLMH 299
           A+F NT         + HIVEF+AGR  L+       R V  + +KGL+++ Q  D L+H
Sbjct: 3   AMFSNTRSVASS---SGHIVEFKAGRSRLEAGSGDTMRKVVAEPKKGLVFIKQSNDMLIH 59

Query: 300 FCWKDRTTGEVEDDLLIFPDDCEFTRVNECTTGRVYVXXXXXXXXXXXXWMQEPKADKDE 479
           FCWKDR TG V DDL+IFPDD EF  V  C  G+VY+            W+Q+   D D+
Sbjct: 60  FCWKDRETGAVVDDLIIFPDDAEFKAVPGCPDGKVYM-LKFKSGDMKLFWIQDSTPDVDK 118

Query: 480 EYCRRINEALNNPPT 524
           +  +++ +ALN PPT
Sbjct: 119 DLVKKVTDALNKPPT 133


>U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical
           protein F45F2.7 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -1

Query: 311 FPTKVHERIFSLVNIQEPLPFVWMYHTT-----FQRHTTSTKFYY 192
           FP  +  + F L+NI  PL   + +H++       +H  STK ++
Sbjct: 561 FPALMETKYFELLNISSPLVVFYRFHSSACLAEIWKHAYSTKHHH 605


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,020,062
Number of Sequences: 27780
Number of extensions: 267989
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)