Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e17
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   1.9  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              20   5.9  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              20   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 105 RQIGQNKEEP*ECQVQGSMLKVPVHPGHH 191
           R  G+  E+P  C + G    VP     H
Sbjct: 82  RSHGKEGEDPYRCNICGKTFAVPARLTRH 110


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +1

Query: 103 DAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 228
           D    KI  + ENV   + C+   + +V  +    EK+   +
Sbjct: 46  DINEGKINMDDENVLLFIECTMKKFNVVDENANFNEKISSDI 87


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +1

Query: 103 DAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 228
           D    KI    ENV+  + C+   ++ V  D    E + + +
Sbjct: 46  DVNDGKINIEDENVQLYIECAMKKFSFVDKDGNFNEHVSREI 87


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 172  LYTLVITDKEKAEKLKQSLP 231
            LYT V+  +E+    K++LP
Sbjct: 1249 LYTRVVDGREELNHGKRTLP 1268


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 172  LYTLVITDKEKAEKLKQSLP 231
            LYT V+  +E+    K++LP
Sbjct: 1245 LYTRVVDGREELNHGKRTLP 1264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,396
Number of Sequences: 438
Number of extensions: 1030
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)