Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e14
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    29   0.52 
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   2.8  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    26   3.7  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    26   3.7  
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    25   6.4  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    25   6.4  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    25   6.4  

>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 159 FLLLISTTAFFVTVPNSCGFTALILIHILMENRER*RYAPTKRPFRSLAHSAL 1
           FL+L  T ++ +++PN   FT     HIL  +R        KRP+R +  S+L
Sbjct: 205 FLILAGTDSYGISLPNLGIFT-----HILRNSRNDLSNYLKKRPYREVIESSL 252


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 462 ERSRSTTPSIVG*RKHNTRTVWNILDNSRDVVSTIKALQR 343
           ERSRS   S+V  R H T    N + N+   V   ++LQR
Sbjct: 94  ERSRSPIASVVSYRSHMTLEDENQIFNAEMAVRGSQSLQR 133


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 311 ISSDY*LTACHLCNAFIVDTTS--LELSRIFHTVRVLCFRYPTIDGVVLLERSSCC 472
           +S+D  L    LCNA  +D T   LE ++ ++  RVL ++ P   G  L+ R + C
Sbjct: 168 VSNDQLLMELQLCNARALDETGQFLEAAKCYY--RVLQYKVP---GNELIYRENLC 218


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 92  SAVNPHEFGTVTKNAVVEI 148
           S+ NPH F +VTK  VV I
Sbjct: 216 SSANPHHFLSVTKQGVVAI 234


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 166 KNFSEEISCRSHRRWFRCHFTRFTDTKRNYS 258
           ++ SEE+  R ++ WF+     FT   + Y+
Sbjct: 108 EHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA 138


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 166 KNFSEEISCRSHRRWFRCHFTRFTDTKRNYS 258
           ++ SEE+  R ++ WF+     FT   + Y+
Sbjct: 108 EHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA 138


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 356 FIVDTTSLELSRIFHTVRVLCFRYPTID 439
           FI   + LE  R+F   R L  RYP  D
Sbjct: 132 FISTESGLETKRLFELARYLPERYPKAD 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,877,536
Number of Sequences: 5004
Number of extensions: 33825
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)