Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e14
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972...    29   2.1  
01_01_0732 - 5698863-5700413                                           29   2.1  
03_06_0352 - 33312443-33312652,33312747-33312854,33313224-333133...    27   6.4  
08_01_0893 - 8789491-8791416                                           27   8.5  

>09_02_0475 +
           9724676-9724936,9725518-9726216,9726273-9726596,
           9726900-9727847
          Length = 743

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 341 HLCNAFIVDTTSLELSRIFHTV 406
           H C  FIV T+S E++++ HTV
Sbjct: 259 HKCTRFIVTTSSEEVAQVMHTV 280


>01_01_0732 - 5698863-5700413
          Length = 516

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/55 (25%), Positives = 31/55 (56%)
 Frame = +2

Query: 83  IRISAVNPHEFGTVTKNAVVEIRSRNQRRTSARKSPAGLIDGGSAAILLGLRIRK 247
           + +S +NP  F T  ++ V  IRS ++   ++ +S    +   +AA+  G+++R+
Sbjct: 259 LHLSGLNPTHFLTALRHTVKSIRSFSKSMLNSMQSAGWDLAAAAAAVHPGVQLRR 313


>03_06_0352 -
           33312443-33312652,33312747-33312854,33313224-33313397,
           33313489-33313695,33313700-33313987,33314087-33314319,
           33314450-33315263
          Length = 677

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 123 SQKTPSSRSEVEINEELQRGNLLPVSSTVVPLPFYSVY 236
           ++K PS   E EINEEL++       S +V +PF   Y
Sbjct: 465 TKKAPSQNGEKEINEELKKE--AEFFSDIVIVPFMDSY 500


>08_01_0893 - 8789491-8791416
          Length = 641

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 59  SASATLQRNDRSVRWHIP 6
           S  A L R +R +RWHIP
Sbjct: 552 SPKAVLNRAERELRWHIP 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,110,123
Number of Sequences: 37544
Number of extensions: 214000
Number of successful extensions: 578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)