Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e14
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-3|CAM36344.1|  204|Caenorhabditis elegans Hypothetical ...    31   0.62 
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81579-3|CAB04658.1|  248|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        27   7.6  

>CU457741-3|CAM36344.1|  204|Caenorhabditis elegans Hypothetical
           protein C42C1.3 protein.
          Length = 204

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = +2

Query: 86  RISAVNPHEFGTVTKNAVVEIRSRNQRRTSARKSPAGL--IDGGSA 217
           ++S + PH+  +V KNA+  ++S+ +++TS +K    +  ID  S+
Sbjct: 156 KLSKIAPHQHSSVVKNAI--MKSKREKKTSCKKHSKSISGIDSSSS 199


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 291 DHPRVVSYPFRGVVSFRIRKPSKMAAEPPSMR 196
           +HP V+ YP   +    I +P ++  EP  MR
Sbjct: 155 EHPTVIDYPIAHMEELMIPEPQRIWPEPEPMR 186


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 334  CVPSLQRFYSRYHIPRIIENIPHSSSIMFPL 426
            C  SL  F+S  ++PRI+E++     + + L
Sbjct: 1250 CSLSLLNFFSHEYVPRILEHVKTEKDLWYTL 1280


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 334  CVPSLQRFYSRYHIPRIIENIPHSSSIMFPL 426
            C  SL  F+S  ++PRI+E++     + + L
Sbjct: 1248 CSLSLLNFFSHEYVPRILEHVKTEKDLWYTL 1278


>Z81579-3|CAB04658.1|  248|Caenorhabditis elegans Hypothetical
           protein R13H4.6 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 89  ISAVNPHEFGTVTKNAVVEIRSRNQRRTSARKSP 190
           I +++  EFG +  N +  I+   +++TSA K P
Sbjct: 27  IKSISKLEFGKIWVNGLGVIKPNGEQKTSAEKGP 60


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 334  CVPSLQRFYSRYHIPRIIENIPHSSSIMFPL 426
            C  SL  F+S  ++PRI+E++     + + L
Sbjct: 1248 CSLSLLNFFSHEYVPRILEHVKTEKDLWYTL 1278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,391,947
Number of Sequences: 27780
Number of extensions: 186957
Number of successful extensions: 589
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)