Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18e12
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   235   1e-62
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    47   8e-06
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    28   3.8  
D38541-1|BAA07544.1|  284|Caenorhabditis elegans CeTMII protein.       28   5.0  
D38540-1|BAA07543.1|  284|Caenorhabditis elegans CeTMI protein.        28   5.0  
D38539-2|BAA07541.1|  284|Caenorhabditis elegans CeTMII protein.       28   5.0  
D38539-1|BAA07540.1|  284|Caenorhabditis elegans CeTMI protein.        28   5.0  
AL132877-4|CAC70112.1|  284|Caenorhabditis elegans Hypothetical ...    28   5.0  
AL132877-1|CAC70114.1|  284|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    28   5.0  
Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  235 bits (576), Expect = 1e-62
 Identities = 107/142 (75%), Positives = 129/142 (90%)
 Frame = +2

Query: 122 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 301
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 302 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 481
           +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ ++ IA+IMR RS
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120

Query: 482 MARYLSGSVKEILGTAQSVGCT 547
           MA+ L G+VKEILGTAQSVGCT
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCT 142


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +2

Query: 467 MRNRSMARYLSGSVKEILGTAQSVGCT 547
           MR RSMA+ L G+VKEILGTAQSVGCT
Sbjct: 1   MRPRSMAKKLEGTVKEILGTAQSVGCT 27


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 543 HPTDCAVPRISFTEPERYRAIDL 475
           HPT CAV    F +P +Y  IDL
Sbjct: 291 HPTACAVSLFLFYDPYQYYLIDL 313


>D38541-1|BAA07544.1|  284|Caenorhabditis elegans CeTMII protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +2

Query: 242 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 412
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 413 IKHNGNISLEDVVGIAKIMRNRSM 484
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>D38540-1|BAA07543.1|  284|Caenorhabditis elegans CeTMI protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +2

Query: 242 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 412
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 413 IKHNGNISLEDVVGIAKIMRNRSM 484
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>D38539-2|BAA07541.1|  284|Caenorhabditis elegans CeTMII protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +2

Query: 242 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 412
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 413 IKHNGNISLEDVVGIAKIMRNRSM 484
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>D38539-1|BAA07540.1|  284|Caenorhabditis elegans CeTMI protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +2

Query: 242 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 412
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 413 IKHNGNISLEDVVGIAKIMRNRSM 484
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>AL132877-4|CAC70112.1|  284|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1d protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +2

Query: 242 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 412
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 413 IKHNGNISLEDVVGIAKIMRNRSM 484
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>AL132877-1|CAC70114.1|  284|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1a protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +2

Query: 242 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 412
           + GDD+ KA  D       ++    TVQ  +A++A +     L+   L+      K    
Sbjct: 52  QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111

Query: 413 IKHNGNISLEDVVGIAKIMRNRSM 484
                  ++++   + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 295 DLETLPVTCGLGNVITHLFRRQTKRTDFR 209
           D ++LP+ C LG V+ + ++     TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414


>Z81571-5|CAB04615.1|  419|Caenorhabditis elegans Hypothetical
           protein M01G12.6 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 219 VLLVCLLKRWVMTL 260
           +L++CLLKRW M L
Sbjct: 180 ILMICLLKRWKMNL 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,018,785
Number of Sequences: 27780
Number of extensions: 268727
Number of successful extensions: 707
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)